Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 428 / 1e-147 Protein kinase superfamily protein (.1) AT2G48010 223 / 3e-68 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G29730 171 / 5e-48 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 170 / 2e-47 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 164 / 2e-45 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 164 / 3e-45 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 161 / 2e-44 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G53380 160 / 2e-44 Concanavalin A-like lectin protein kinase family protein (.1) AT1G29740 160 / 6e-44 Leucine-rich repeat transmembrane protein kinase (.1) AT5G03140 158 / 1e-43 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133000 [exp] 495 / 2e-173 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 489 / 2e-171 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 460 / 6e-160 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 331 / 9e-110 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 234 / 5e-72 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 232 / 3e-71 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 209 / 8e-63 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 203 / 3e-61 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.011G073516 [exp] 177 / 1e-51 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001295 [exp] 372 / 3e-125 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 367 / 2e-123 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 322 / 6e-110 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 321 / 3e-108 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10029711 [exp] 300 / 1e-97 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018860 [exp] 269 / 2e-88 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10028551 [exp] 269 / 6e-86 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10029714 [exp] 264 / 2e-84 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10028552 [exp] 262 / 3e-83 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 258 / 9e-82 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G132250.1 pacid=42813971 polypeptide=Potri.017G132250.1.p locus=Potri.017G132250 ID=Potri.017G132250.1.v4.1 annot-version=v4.1 ATGTCAAATGGGAATCTTGATGACCATTTATTTCCATCATCGGTTAATCAAATTCAAAAGCAATTGTTAAGTTGGCCTCAAAGAAAGAGCATAATTTTGG ATGTGGCAAGGGGATTAGCTTATTTGCACTATGGAGTCAAGCCTGGAATATATCATAGAGATATCAAGGGGACAAATATATTGTTAGATGCTGATATGAG AGCAAGAGTTGCCGATTTTGGGTTGGCAAAGCAAAGTAGGGAAGGGCAGTCTCATCTTACTACAAGAGTGGCTGGAACTCATTGGTACTTAGCACCCGAA TATGCTCTTTATGGTCAACTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCTT CTTCAGGGTCACCTCGTGCGTTGTTGATCACAGACTGGGCCTGGTCATTGGTGAAAGCTGGAAAAGTGGAACAGGCTTTGGATGCTTCTTTGTTGAGAGG TGGTGATTCTTCAAACTCAAATCCGAAGGGGACAATGGAAAGGTTTGTGCTGGTTGGGATTTTGTGTGCTCATATAATGGTGGCTCTAAGGCCAACCATT CTGGATGCGCTGAAAATGTTAGAAGGAGATATTGAAGTTCCACAGATTCCAGATCGACCAGTGCCTCTTGGGCACCCTTCGTTCCAAGCTGATGGCAATA ATTTCAGCATCTCACCAGTATTGAGTGGACCAAAATTACAGTCTGGAGACATGCTTAGAGAAAATTACAATAGATCTTCTAAGTGGCCTGAGACTACAAG AGGTAGCCATATCAAGACTAGCCTACAAAATACTTCAAATCACCATTTTATGACAACAACATTGCTTAGTAGACCAATGCCTGACAAAATCTAA
AA sequence Show only first row Show all	>Potri.017G132250.1 pacid=42813971 polypeptide=Potri.017G132250.1.p locus=Potri.017G132250 ID=Potri.017G132250.1.v4.1 annot-version=v4.1 MSNGNLDDHLFPSSVNQIQKQLLSWPQRKSIILDVARGLAYLHYGVKPGIYHRDIKGTNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHWYLAPE YALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRALLITDWAWSLVKAGKVEQALDASLLRGGDSSNSNPKGTMERFVLVGILCAHIMVALRPTI LDALKMLEGDIEVPQIPDRPVPLGHPSFQADGNNFSISPVLSGPKLQSGDMLRENYNRSSKWPETTRGSHIKTSLQNTSNHHFMTTTLLSRPMPDKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11050			Protein kinase superfamily pro...		Potri.017G132250 [exp]	0	1
AT3G14830			unknown protein		Potri.011G106600 [exp]	4.24	0.8075
AT1G33970			P-loop containing nucleoside t...		Potri.013G104800 [exp]	4.47	0.8155
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	6.08	0.8389
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	9.79	0.8295
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G259400 [exp]	13.63	0.8319
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129850 [exp]	22.97	0.7748
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	23.06	0.7720
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176950 [exp]	33.01	0.8028
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Potri.008G129800 [exp]	36.74	0.7514
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.008G186500 [exp]	37.30	0.7277

Compare expression of checked genes

Potri.017G132250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.