Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 805 / 0 Protein kinase superfamily protein (.1) AT2G48010 369 / 3e-119 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G29720 261 / 1e-75 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 257 / 4e-74 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 254 / 5e-73 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G33430 246 / 1e-72 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G60800 245 / 5e-72 NIK3 NSP-interacting kinase 3 (.1) AT1G70530 244 / 1e-71 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G07650 250 / 2e-71 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 250 / 2e-71 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133000 [exp] 1249 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 1036 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 630 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 491 / 1e-171 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 354 / 8e-113 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 348 / 1e-110 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 330 / 2e-104 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 318 / 7e-101 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.011G072841 [exp] 269 / 8e-84 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001295 [exp] 774 / 0 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 752 / 0 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 553 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 461 / 8e-158 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028549 [exp] 454 / 2e-156 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10028552 [exp] 447 / 6e-150 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10028551 [exp] 442 / 7e-148 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018861 [exp] 434 / 1e-144 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10029714 [exp] 419 / 2e-139 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 367 / 1e-121 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G132800.1 pacid=42814566 polypeptide=Potri.017G132800.1.p locus=Potri.017G132800 ID=Potri.017G132800.1.v4.1 annot-version=v4.1 ATGCTTGGCATGGGGGGCAGCAGTAATCTTGATTTCTTAAGGTTTCTTGTCTTGATATCATTCTGTCTCCCTCTCACCTCTGCAGCAGCAGAAACCTCCA CTTCAAACATATGCCCTATGGACCTTAACTATGTCTTAAGAATCCCGTGGAACCAAACTCTTTGTCGAAACTTCAACCCTCTTGCTCAAAATGACAATAC CAACAGCACAAGCAAGCCCCCATGTTGCCAAACCATACTCTCCCTCTTTGGCGTTGCCCTATCTCAACATCTCAAAGAAACCTCTTTTTTTCAACTTCCA AACTTAGCTACCTCTAGTTCTTGCCTTCAAGATTACCAGTCAAAGCTCAGCTCCTTTTCTCTTTCCGACGATCTTGTCTCTCACTGCTTTAACCCTTTAC AGTTTGTTACAGCACCTAACATCTGTGCCCGTATAGAGACATCTCAAGACTGGGTTGATCAACTTGGTAAATCGACTTCTCTTGATTCAGATTGCCGGTC TGATCTTACTGATCTTACAGCTTGTGCTTCTTGTCTTAGAGCTGGTTATAAAGTACAGTCGTTGTTGCTGTCTGCTGATGGTAATCAAACTCATGCTCAA GATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGTATTGTTAACGAGTTTGGTCCTGAAAGTGATGGTGTTGTTTCATGTATATTTAGTTTGGAATTAA ATTCAAGCGTTGGTTCAGCTAGCAATTCTCATTCTGCTCTTGTTTTTGGCTTGACTGGTGCTGGTGTTGCTATTTTGGTAATCTCTAGTTTGTTAGGATT GTATCTTTGGTATGATAAGAAATGGAGAAGGAAAAAGAATCTAGGGTTTGGTTTTGATTTAGATGAACAACAAGGGTCTAGGCCTAAACTGAGGCCGAAT ACAGGGTCAATTTGGTTTAAAATTCGGGATCTTGAGAAGGCAACAGACAATTTCTCGCAGAAGAATTTTATTGGGAGAGGCGGGTTTGGTTTTGTTTACA AGGGGGTTTTATCTGATGGGACAGTGGTGGCTATTAAAAGGGTTATAGAATCTGATTTTCAAGGTGATGCAGAGTTTTGCAACGAGGTTGAGATTATTAG CAACTTGAAGCACAGGAATTTGGTGCCGCTCAGAGGGTGCTGTGTGATTGACGATGATGTAAATTCTGATGAGAGAGGCAATCAGAGGTATCTTGTTTAT GATTACATGTCAAATGGGAATCTTGATGACCATTTATTTCCATCATCGGATAATCAAATTCAAAAGCAATTGTTAAGTTGGCCTCAAAGAAAGAGCATAA TTTTGGATGTGGCGAAGGGATTAGCTTATTTGCACCATGGAGTCAAGCCTGGAATATATCATAGAGATATCAAGGGGAAAAATATATTGTTAGATGCTGA AATGAGAGCAAGAGTTGCCGATTTTGGGTTGGCAAAGCAAAGTAGGGAAGGGCAGTCTCATCTTACGACAAGAGTGGCTGGAACTCATGGGTACTTAGCA CCCGAATATGCTCTTTATGGTCAACTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGAGTGGGAGAAAAGCTCTTGATT TGTCTTCTTCAGGGTCACCTCGTGCTTTATTGATCACAGACTGGGCCTGGTCATTGGTGAAAGCTGGAAAAGTGGAACAGGCATTGGATGCTTCTTTGTT GAGAGGTGGTGATTCTTCAAATTCAAATCCGAAGGGGATAATGGAAAGGTTTGTGCTGGTTGGGATTTTGTGTGCTCATATAATGGTGGCTCTAAGGCCA ACCATTCTGGATGCGCTGAAAATGTTAGAAGGAGATATTGAAGTTCCACAGATTCCAGATCGACCAGTGCCTCTTGGGCACCCTTCGTTCCAAGCTGATG GCAATAATTTCAGCATCTCACCAGTATTGAGGGGACCAAAATTACCGCCTGGAGACACGCTTAGGTAA
AA sequence Show only first row Show all	>Potri.017G132800.1 pacid=42814566 polypeptide=Potri.017G132800.1.p locus=Potri.017G132800 ID=Potri.017G132800.1.v4.1 annot-version=v4.1 MLGMGGSSNLDFLRFLVLISFCLPLTSAAAETSTSNICPMDLNYVLRIPWNQTLCRNFNPLAQNDNTNSTSKPPCCQTILSLFGVALSQHLKETSFFQLP NLATSSSCLQDYQSKLSSFSLSDDLVSHCFNPLQFVTAPNICARIETSQDWVDQLGKSTSLDSDCRSDLTDLTACASCLRAGYKVQSLLLSADGNQTHAQ DCFYFAVLYAAGIVNEFGPESDGVVSCIFSLELNSSVGSASNSHSALVFGLTGAGVAILVISSLLGLYLWYDKKWRRKKNLGFGFDLDEQQGSRPKLRPN TGSIWFKIRDLEKATDNFSQKNFIGRGGFGFVYKGVLSDGTVVAIKRVIESDFQGDAEFCNEVEIISNLKHRNLVPLRGCCVIDDDVNSDERGNQRYLVY DYMSNGNLDDHLFPSSDNQIQKQLLSWPQRKSIILDVAKGLAYLHHGVKPGIYHRDIKGKNILLDAEMRARVADFGLAKQSREGQSHLTTRVAGTHGYLA PEYALYGQLTEKSDVYSFGVVVLEIMSGRKALDLSSSGSPRALLITDWAWSLVKAGKVEQALDASLLRGGDSSNSNPKGIMERFVLVGILCAHIMVALRP TILDALKMLEGDIEVPQIPDRPVPLGHPSFQADGNNFSISPVLRGPKLPPGDTLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	1.00	0.9889
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	3.87	0.9479
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067400 [exp]	4.47	0.9404
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	4.47	0.9509
AT5G65250			unknown protein		Potri.005G073500 [exp]	5.65	0.9366
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	5.91	0.9382
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	6.32	0.9404
AT3G57990			unknown protein		Potri.003G088500 [exp]	7.21	0.9272
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.009G024000 [exp]	7.34	0.9234
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	9.16	0.9267

Compare expression of checked genes

Potri.017G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.