Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 830 / 0 Protein kinase superfamily protein (.1) AT2G48010 383 / 6e-125 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G29720 264 / 2e-76 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 261 / 6e-76 Leucine-rich repeat transmembrane protein kinase (.1) AT1G70530 249 / 2e-73 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G56145 254 / 5e-73 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G33430 246 / 9e-73 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G60800 244 / 5e-72 NIK3 NSP-interacting kinase 3 (.1) AT1G07650 250 / 1e-71 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 250 / 1e-71 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G132800 [exp] 1308 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 1099 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 656 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 497 / 5e-174 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 365 / 3e-117 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 357 / 4e-114 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 340 / 2e-108 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 327 / 1e-104 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.011G072841 [exp] 272 / 6e-85 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001295 [exp] 807 / 0 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 783 / 0 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 573 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 462 / 3e-158 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028552 [exp] 466 / 3e-157 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10028549 [exp] 455 / 1e-156 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10028551 [exp] 452 / 1e-151 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018861 [exp] 451 / 3e-151 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10029714 [exp] 439 / 4e-147 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 369 / 3e-122 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G133000.1 pacid=42812991 polypeptide=Potri.017G133000.1.p locus=Potri.017G133000 ID=Potri.017G133000.1.v4.1 annot-version=v4.1 ATGGGGGGCAGCAGTAATCTTGATTTCTTAAGGTTTCTTGTCTTAATATCATTCTGTCTCCCTCTCACCTATGCAGCAGCAGAAACCTCCACTTCAAACA TATGCCCTATGGACCTTAACTATGTCTTAAGAATCCCGTGGAACCAAACTCTTTGTCGAAACTTCAACCCTCTTGCTCAAAATGACAATACCAACAGCAC AAGCAAGCCCCCATGTTGCCAAACCATACTCTCCCTCTTTGGGGTTGCCCTATCTCAACATCTCAAAGAAACCTCTTTTTTTCAACTTCCAAACTTAGCT ACCTCTAGTTCTTGCCTTCAAGATTACCAGTCAAAGCTCATCTCTTTTTCTCTTTCCGACAATCTTGTCTCTCATTGCTTTAACCCTTTACAGTTTGTTA CAGCACCTAACATCTGTGCCCGTATAGAGACATCTCAAGACTGGGTTGATCAACTTGGTAAGTCGACTTCTCTTGATTCAGATTGCCGGTCTGATCTTAC TGATCTTACAGCTTGTGATTCTTGTCTTAGAGCTGGTAATAAAGTACAGTCGTTGTTGTTGTCTGCTGATGGTAATCAAACTCATGCTCAAGATTGTTTT TACTTTGCTGTTCTCTATGCTGCTGGTGTTGTTAACGAGTTTGGTCCTGAAAGTGATGGTGTTGTTTCATGTATATTTGGTTTGGAATTAAATTCAAGAG TTGGTTCAGCTAGCAATTCTCATTCTGCTCTTGTTTTTGGCTTGACTGGTGCTGGTGTTGCTATTTTGGTAATGTCTAGTTTGTTAGGATTGTATCTGTG GTATGATAAGAAATGGAGAAGGAAAAAGAATTTAGGGTTTGGTTTTGATTTAGATGAACAACAAGGGTCTAGGCCTAAACTGAGGCCGAATACAGGGTCA ATTTGGTTTAAAATTCGGGATCTTGAGAAGGCAACAGACAATTTCTCGCAGAAGAATTTTATTGGGAGAGGCGGGTTTGGTTTTGTTTACAAGGGGGTTT TATCTGATGGGACAGTGGTGGCTATTAAAAAGGTTATAGAATCTGATTTTCAAGGTGATGCAGAGTTTTGCAACGAGGTTGAGATTATTAGCAACTTGAA GCACAGGAATTTGGTGCCGCTCAGAGGGTGCTGTGTGATTGACGATGATGTAAATTCTGATGAGAGAGGCAATCAGAGGTATCTTGTTTATGATTACATG TCAAATGGGAATCTTGATGACCATTTATTTCCATCATCGGATAATCAAATTCAAAAGCAATTGTTAAGTTGGCCTCAAAGGAAGAGCATAATTTTGGATG TGGCAAAGGGATTAGCTTATTTGCACCATGGAGTCAAGCCTGGAATATATCATAGAGATATCAAGGGGACAAATATATTGTTAGATGCTGAAATGAGAGC AAGAGTTGCCGATTTTGGGTTGGCAAAGCAAAGTAGGGAAGGGCAGTCTCATCTTACGACAAGAGTGGCTGGAACTCATGGGTACTTAGCACCCGAATAT GCTCTTTATGGTCAACTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGAGTGGGAGAAAAGCTCTTGATTTGTCTTCTT CAGGGTCACCTCGGGCTTTATTGATCACGGACTGGGCCTGGTCATTGGTGAAAGCTGGAAAAGTGGAACAGGCTTTGGATGCTTCTTTGTTGAGAGGTGG TGATTCTTCAAATTCAAATCCGAAGGGGATAATGGAAAGGTTTGTGCTGGTTGGGATTTTGTGTGCTCATATAATGGTGGCTCTAAGGCCAACCATTCTG GATGCGCTGAAAATGTTAGAAGGAGATATTGAAGTTCCACAGATTCCAGATCGACCAGTGCCTCTTGGGCACCCTTCGTTCCATGCTGATGGCAATAGTT TCAGCATCTCACCAGTATTGAGTGGACCAAAATTACAGCCTGGAGACATGCTTAGGTAA
AA sequence Show only first row Show all	>Potri.017G133000.1 pacid=42812991 polypeptide=Potri.017G133000.1.p locus=Potri.017G133000 ID=Potri.017G133000.1.v4.1 annot-version=v4.1 MGGSSNLDFLRFLVLISFCLPLTYAAAETSTSNICPMDLNYVLRIPWNQTLCRNFNPLAQNDNTNSTSKPPCCQTILSLFGVALSQHLKETSFFQLPNLA TSSSCLQDYQSKLISFSLSDNLVSHCFNPLQFVTAPNICARIETSQDWVDQLGKSTSLDSDCRSDLTDLTACDSCLRAGNKVQSLLLSADGNQTHAQDCF YFAVLYAAGVVNEFGPESDGVVSCIFGLELNSRVGSASNSHSALVFGLTGAGVAILVMSSLLGLYLWYDKKWRRKKNLGFGFDLDEQQGSRPKLRPNTGS IWFKIRDLEKATDNFSQKNFIGRGGFGFVYKGVLSDGTVVAIKKVIESDFQGDAEFCNEVEIISNLKHRNLVPLRGCCVIDDDVNSDERGNQRYLVYDYM SNGNLDDHLFPSSDNQIQKQLLSWPQRKSIILDVAKGLAYLHHGVKPGIYHRDIKGTNILLDAEMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEY ALYGQLTEKSDVYSFGVVVLEIMSGRKALDLSSSGSPRALLITDWAWSLVKAGKVEQALDASLLRGGDSSNSNPKGIMERFVLVGILCAHIMVALRPTIL DALKMLEGDIEVPQIPDRPVPLGHPSFHADGNSFSISPVLSGPKLQPGDMLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	1.00	0.9889
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	2.44	0.9417
AT3G57990			unknown protein		Potri.016G046900 [exp]	4.24	0.9236
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	5.91	0.9279
					Potri.002G139000 [exp]	6.40	0.9027
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	6.92	0.9168
AT5G65250			unknown protein		Potri.005G073500 [exp]	6.92	0.9283
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	7.21	0.9352
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	8.83	0.9166
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.013G079800 [exp]	9.00	0.9088

Compare expression of checked genes

Potri.017G133000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.