Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59990 716 / 0 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 694 / 0 MAP2A methionine aminopeptidase 2A (.1) AT3G51800 108 / 5e-26 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G084800 [exp] 750 / 0 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.006G102200 [exp] 103 / 4e-24 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 102 / 2e-23 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000403 [exp] 664 / 0 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10027121 [exp] 447 / 1e-156 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 384 / 5e-133 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 257 / 4e-82 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10003379 [exp] 99 / 8e-22 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 94 / 7e-21 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 94 / 9e-21 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 93 / 2e-20 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 54 / 2e-07 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.017G133200.2 pacid=42813631 polypeptide=Potri.017G133200.2.p locus=Potri.017G133200 ID=Potri.017G133200.2.v4.1 annot-version=v4.1 ATGGCAAGTGAGGACTTGAAATCCCAAGTCCCGGTTGAAGAAAATGGGACTAAAGAAGAAGAGAAAAATGGGAATTTAGAGGCTTCGGTCAGCAAGGAAA ACGGTGAATCTTCTGATGTTTTTTCAGTAATACAAGAAGAAGAAGGAGAAGAAGAGGAAGGAGAGACCAAAGAAGCTACAAAGAAAAAGAAGAAGAAAAA CAAAAGCAAGAGGAAAAAGGAATTGGCAAAGCAGACTGATCCACCCACTATTCCTGTCGTGGATCTTTTCCCTTCTGGGGAGTTTCCTGAAGGTGAAATC CAGCAATACAAAGACGATAATTTGTGGAGGACTACATCTGAAGAGAAAAGAGCATTGGAACGTCTTGAACACCCAATGTACAATTCAGTTCGCCAGGCAG CGGAAGTTCATCGCCAGGTTCGGAAGTATATGAAAAGCATTTTGAAGCCTGGAATGTTAATGACTGATCTCTGTGAAACCTTGGAGAACACTGTTCGTAA GCTAATATCAGAGAATGGTCTGCAAGCTGGCATTGCATTTCCTACTGGATGCTCTCTGAACTGTGTTGCTGCTCATTGGACCCCAAATACAGGGGATAAG ACTGTGCTTCAGTATGATGATGTGATGAAATTGGATTTTGGGACCCATATAGATGGACGTATTGTGGACTGTGCATTTACAGTGGCATTCAACCCTATGT TTGATCCACTACTTGAAGCTTCACGCGAGGCAACCAACACGGGTATCAAGGAATCAGGGATTGATGTGCGTCTATGTGATGTTGGTGCTGCCATCCAAGA GGTCATGGAATCATACGAGGTTGAAATTAATGGAAAGGTGTTTCAAGTTAAGAGCATCCGTAACTTGAATGGGCACAGCATTGGCCCCTACCAGATTCAT GCTGGAAAATCTGTTCCCATTGTTAAAGGAGGGGAACAGACAAAAATGGAAGAGGGTGAATTTTTTGCAATTGAAACATTTGCATCTACAGGGAAAGGAT ATGTAAGAGAAGATCTAGAGTGCAGCCATTACACGAAAGATTTTGATGTTGGCCATATCCCATTGAGGTTGCCAAGAGCAAAGCAACTGCTAGCAACAAT CAATAAGAACTTCTCCACATTAGCCTTTTGTAGAAGGTATTTAGATCGCTTGGGCGAGACTAAATATTTAATGGCACTCAAGAATCTGTGTGATTCTGGC ATTGTTCAGCCTTTACCTCCTCTGTGTGATGTTAAGGGCAGTTATGTATCTCAATTCGAGCATACCATCTTGCTACGGCCAACCTGCAAAGAGGTCATAT CGAGGGGCGATGACTACTAG
AA sequence Show only first row Show all	>Potri.017G133200.2 pacid=42813631 polypeptide=Potri.017G133200.2.p locus=Potri.017G133200 ID=Potri.017G133200.2.v4.1 annot-version=v4.1 MASEDLKSQVPVEENGTKEEEKNGNLEASVSKENGESSDVFSVIQEEEGEEEEGETKEATKKKKKKNKSKRKKELAKQTDPPTIPVVDLFPSGEFPEGEI QQYKDDNLWRTTSEEKRALERLEHPMYNSVRQAAEVHRQVRKYMKSILKPGMLMTDLCETLENTVRKLISENGLQAGIAFPTGCSLNCVAAHWTPNTGDK TVLQYDDVMKLDFGTHIDGRIVDCAFTVAFNPMFDPLLEASREATNTGIKESGIDVRLCDVGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGPYQIH AGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYTKDFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDSG IVQPLPPLCDVKGSYVSQFEHTILLRPTCKEVISRGDDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G447132 [exp]	2.00	0.7571
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	4.89	0.6848
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.006G266900 [exp]	11.91	0.6067
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	12.96	0.6627
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017450 [exp]	15.29	0.6625
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	15.87	0.7023
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	19.23	0.6769
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169400 [exp]	21.02	0.6310
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	25.49	0.6172	Pt-GLT1.3
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G136000 [exp]	27.92	0.6009

Compare expression of checked genes

Potri.017G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.