Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24130 69 / 9e-16 Protein of unknown function, DUF538 (.1) AT1G09310 69 / 2e-15 Protein of unknown function, DUF538 (.1) AT1G56580 69 / 2e-15 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 59 / 6e-12 Protein of unknown function, DUF538 (.1) AT1G30020 48 / 9e-08 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G084600 [exp] 156 / 2e-50 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 144 / 8e-46 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 86 / 5e-22 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 84 / 2e-21 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 70 / 3e-16 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 69 / 9e-16 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 67 / 5e-15 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001891 [exp] 121 / 2e-36 AT5G46230 120 / 8e-36 Protein of unknown function, DUF538 (.1) Lus10013912 [exp] 121 / 2e-36 AT5G46230 123 / 5e-37 Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 117 / 6e-35 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 102 / 9e-29 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 76 / 2e-18 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 76 / 2e-18 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 65 / 4e-14 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10033613 [exp] 62 / 5e-14 AT1G56580 63 / 4e-14 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 60 / 3e-12 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 57 / 6e-11 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.017G133300.2 pacid=42813169 polypeptide=Potri.017G133300.2.p locus=Potri.017G133300 ID=Potri.017G133300.2.v4.1 annot-version=v4.1 ATGGCAATCTCTCTTCTTGAGGAGTTTGGACTTCCCCTGGGACTTCTTCCTCTTGCAGATGTGATCGAAGTTGGTTTTGTTAGTAGTACTGGATACATGT GGATCGTCCAAAAGAAGAAGGTGGAGCACAACTTCAAGATACCCAGCAAGCTTGTGAGCTATGGCACTGATATAACTGGCTATGTCAGCAAAAAACAGAT AAAGAAACTCAAGGGAGTACTGAAGGCTAAAGAACTCATGCTATGGCCTCCAGTAAATGAGATAACCGTTGATGATCCACCCACCGGCAAAATTCACTTC AAGAGCCTTGCTGGCATCACCAAAACATTCCCAGTAGAGGCATTTGCTGCTGGTCAGTAA
AA sequence Show only first row Show all	>Potri.017G133300.2 pacid=42813169 polypeptide=Potri.017G133300.2.p locus=Potri.017G133300 ID=Potri.017G133300.2.v4.1 annot-version=v4.1 MAISLLEEFGLPLGLLPLADVIEVGFVSSTGYMWIVQKKKVEHNFKIPSKLVSYGTDITGYVSKKQIKKLKGVLKAKELMLWPPVNEITVDDPPTGKIHF KSLAGITKTFPVEAFAAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.017G133300 [exp]	0	1
					Potri.014G081900 [exp]	7.87	0.9902
AT1G09310			Protein of unknown function, D...		Potri.004G056700 [exp]	10.95	0.9899
					Potri.002G158700 [exp]	19.62	0.9891
					Potri.001G307100 [exp]	20.63	0.9891
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213446 [exp]	21.97	0.9891
					Potri.007G106900 [exp]	23.66	0.9890
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G026600 [exp]	24.08	0.9890
					Potri.019G100100 [exp]	24.91	0.9890
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	27.54	0.9890	CYP728F1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212923 [exp]	28.77	0.9887

Compare expression of checked genes

Potri.017G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.