Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60960 637 / 0 PNM1 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61370 154 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 119 / 9e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G49730 120 / 1e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 116 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 115 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22670 110 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 109 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 107 / 6e-25 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 108 / 1e-24 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068400 [exp] 153 / 7e-41 AT5G61370 580 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 133 / 2e-33 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G247200 [exp] 132 / 8e-33 AT5G43820 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 122 / 1e-29 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 118 / 6e-28 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 116 / 1e-27 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 116 / 2e-27 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 115 / 2e-27 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 115 / 5e-27 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017862 [exp] 689 / 0 AT5G60960 645 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034673 [exp] 687 / 0 AT5G60960 639 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000207 [exp] 160 / 4e-43 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021630 [exp] 160 / 4e-43 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000564 [exp] 157 / 3e-42 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011459 [exp] 130 / 2e-32 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039021 [exp] 129 / 4e-32 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 121 / 3e-29 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041193 [exp] 115 / 5e-27 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 113 / 2e-26 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G133400.3 pacid=42813581 polypeptide=Potri.017G133400.3.p locus=Potri.017G133400 ID=Potri.017G133400.3.v4.1 annot-version=v4.1 ATGCCACCTTTAACCTCCTTCCACCTCCGTCATCTCCTCCGCCACTACCACCTCTCCTCTCCACCACCAATAACTTTCTCTTTGCATTCTACCCCTACCC ATCTCCCCAAAACCCCAGCTTTTCCCTTCTGTCTCTCCCAAAGACCCTTCTCCTCCTCCCAAACCTTAAACCCTAACGCCATTGAAAGTCCAGATCCCGC AATAGTTCAGTCTCTATCTACTGAGATTTCAAGAGACCCAAACACCGACCCTTTATCAATCTCAGAAAGGCTCCACCTTTCCTTCTCGCACTTAACGAAG AACAACGCCTTAACACCTTCTCTAGTCCTGCAAACCCTCAAGCTTTCTCCTGATGCAGGCCGTACAGTTATTGGGTTTCACAATTGGCTTATTAAAGATG CAAACTTTGAGCAAAATGACGAGTCTTTGGCCCTTTTTGTTGACTATTTTGGTAGAAGAAAGGATTTTAAAGCAGCCCATGATTTGCTTGTTGAAGGTAA AAGTGTTGCTGGGGTTAAGTGTTTTGAGTCTATGATTGATAGGCTTGTGAGAGCAGGGAGGACAACACAAGTCATTGGGTTTTTTGAGAGAATGGAGAGG GATTATGGGTTTAAGAGAGACAAGGAAAGTCTTACATTTGTAGTTCAGAAGTTGTGTGAAAATGGATATGCAAGTTATGCTGAGAAAATGGTGAAGAATT TGGCTAATGAGATATTTCCCGATGATGGTATTTGTGATTTGTTAATTAAAGGTTGGTGTGTTGATGGGAAATTAGAGGAGGCTAAAAGATTAGCAGGGGA GATGTATAGAGGTGGTTTTGAGATTGGTACAATGGCGTTTAATGCTATGCTTGACTGTGTTTGCAAGCTTTGTCGGGAAAAGGATCCTTTTAGGTTGGAG TCGGAGGTGGAGAAAGTGTTGATGGAAATGGATATTCGTGGAGTTCCACGAAATGTCGAGACTTTTAATGTATTGATTAGTAATCTGTGTAAGGTAAGGA GAACTGAGGATGCAATGAAGTTGTTTTCTAGGATTGGGGAATGGGGTTGTTGTCCAGATGAGACTACATTTCTTGTTTTGATTAGGAGCTTGTATCAGGC AGCTAGAGTTGGTGAGGGGGATGAGATGATTGATAGAATGAAGAGTGCAGGGTATGGTGATAAGCTGGATAAGAAGGCGTATTATGGATTTTTGAAGATT TTGTGTGGGATCGAGAGGCTTGAGCATGCTATGAGCGTGTTTGAGATGATGAAGGCAGATGGGTGCAAGCCTGGGATCAAGACTTATGATTTGTTGATGG GGAAGTGGTGTACACATAATCGTCTTGATAAAGCAAATGTTCTTTATAACGAAGCATTGAGCAATGGGGTGACAGTGACACCCAAAGAGTACAGGGTGGA TCCGAAGTTTATGAAAAAACCGAAGGCTGTTAAGAAAGAGAAGAAGAGGGAGACATTGCCAGAGAAAATGGCAAGGAAGAGGAGGCGGCTTAAGCAGATC AGATTGAGTTTTGTGAAGAAGCCCAAGAAGGGGATGCGCCGTGCCCTTTGA
AA sequence Show only first row Show all	>Potri.017G133400.3 pacid=42813581 polypeptide=Potri.017G133400.3.p locus=Potri.017G133400 ID=Potri.017G133400.3.v4.1 annot-version=v4.1 MPPLTSFHLRHLLRHYHLSSPPPITFSLHSTPTHLPKTPAFPFCLSQRPFSSSQTLNPNAIESPDPAIVQSLSTEISRDPNTDPLSISERLHLSFSHLTK NNALTPSLVLQTLKLSPDAGRTVIGFHNWLIKDANFEQNDESLALFVDYFGRRKDFKAAHDLLVEGKSVAGVKCFESMIDRLVRAGRTTQVIGFFERMER DYGFKRDKESLTFVVQKLCENGYASYAEKMVKNLANEIFPDDGICDLLIKGWCVDGKLEEAKRLAGEMYRGGFEIGTMAFNAMLDCVCKLCREKDPFRLE SEVEKVLMEMDIRGVPRNVETFNVLISNLCKVRRTEDAMKLFSRIGEWGCCPDETTFLVLIRSLYQAARVGEGDEMIDRMKSAGYGDKLDKKAYYGFLKI LCGIERLEHAMSVFEMMKADGCKPGIKTYDLLMGKWCTHNRLDKANVLYNEALSNGVTVTPKEYRVDPKFMKKPKAVKKEKKRETLPEKMARKRRRLKQI RLSFVKKPKKGMRRAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	0	1
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.004G018000 [exp]	2.64	0.8380
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	5.19	0.8088
AT1G15870			Mitochondrial glycoprotein fam...		Potri.001G047600 [exp]	5.29	0.8122
AT5G58930			Protein of unknown function (D...		Potri.001G248400 [exp]	7.07	0.7146
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.007G028400 [exp]	8.66	0.7987
AT1G14060			GCK domain-containing protein ...		Potri.019G081400 [exp]	9.59	0.8058
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.017G108100 [exp]	10.24	0.7475
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Potri.001G369500 [exp]	10.58	0.7709	Pt-ATRPAC42.1
AT5G57120			unknown protein		Potri.018G140200 [exp]	13.85	0.7917
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	15.87	0.7708	Pt-NAP57.1

Compare expression of checked genes

Potri.017G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.