Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 202 / 2e-64 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37050 180 / 1e-55 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37070 178 / 5e-55 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 172 / 2e-52 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 140 / 1e-40 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G39220 56 / 1e-09 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134151 [exp] 295 / 2e-100 AT2G26560 509 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134101 [exp] 294 / 3e-100 AT2G26560 513 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133901 [exp] 293 / 6e-100 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 293 / 8e-100 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 293 / 1e-99 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 293 / 1e-99 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133951 [exp] 293 / 1e-99 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 289 / 3e-98 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 276 / 3e-93 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 173 / 6e-53 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 168 / 2e-50 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 168 / 2e-50 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10036526 [exp] 47 / 2e-06 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10040394 [exp] 47 / 2e-06 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 46 / 3e-06 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G133800.2 pacid=42814254 polypeptide=Potri.017G133800.2.p locus=Potri.017G133800 ID=Potri.017G133800.2.v4.1 annot-version=v4.1 ATGAACCCAATGGAATATGGTCGATTTCTAGTCCTGTCGTTGGGCACTGGTACAGCAAAATCGGAAGGAAAGTATGATGCCGATGAAGCAGCCAAGTGGG GTATCTTTGGATGGTTGACTAGTGATCATTCTACTCCATTAGTGGATGTTTTTACACAAGCTAGTGGTGACATGGTTGATTTTCATATTTCCACTGTTTT TCAAGCCCTTAACTCTGAAGAAAATTATCTTCGAATTCAGGATGACACATTGACTGGAACACTTTCATCCGTGGATGTTGCTACAAAAGAGAATTTGGAA AATCTTGTAAAAGTGGGTGAGAAATTACTGGAGAAACCAGTTTCAAGAGTGAATTTGGCTACTGGAGTCTATGAACCTATTAATAAGATGACTAATGAAG AGGCTCTCACAAAGTTGGCTAAATTACTCTCAAGGGAGAAGCAACTTCGTGAAGTTAGGTCATCATTTCTTGGAAAAGCTTCTGCTTCAAAATTATGA
AA sequence Show only first row Show all	>Potri.017G133800.2 pacid=42814254 polypeptide=Potri.017G133800.2.p locus=Potri.017G133800 ID=Potri.017G133800.2.v4.1 annot-version=v4.1 MNPMEYGRFLVLSLGTGTAKSEGKYDADEAAKWGIFGWLTSDHSTPLVDVFTQASGDMVDFHISTVFQALNSEENYLRIQDDTLTGTLSSVDVATKENLE NLVKVGEKLLEKPVSRVNLATGVYEPINKMTNEEALTKLAKLLSREKQLREVRSSFLGKASASKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133800 [exp]	0	1
AT5G52160			Bifunctional inhibitor/lipid-t...		Potri.015G139100 [exp]	2.23	0.9222
AT2G26530		AR781	Protein of unknown function (D...		Potri.009G068200 [exp]	4.47	0.8759
AT3G22640		PAP85	cupin family protein (.1)		Potri.005G212266 [exp]	7.61	0.7921
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.010G117400 [exp]	7.74	0.8596
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034400 [exp]	26.55	0.8639
AT3G62230		DAF1	DUO1-activated F-box 1, F-box ...		Potri.001G420500 [exp]	52.44	0.7263
AT1G61280			Phosphatidylinositol N-acetylg...		Potri.014G043400 [exp]	65.58	0.7309
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.010G147700 [exp]	210.49	0.7401
AT2G35612			unknown protein		Potri.004G234800 [exp]	242.48	0.7399
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	250.90	0.7278

Compare expression of checked genes

Potri.017G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.