Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40990 299 / 7e-100 GLIP1 GDSL lipase 1 (.1) AT1G53990 298 / 2e-99 GLIP3 GDSL-motif lipase 3 (.1) AT3G14225 275 / 4e-90 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53940 271 / 3e-88 GLIP2 GDSL-motif lipase 2 (.1) AT1G53920 269 / 9e-88 GLIP5 GDSL-motif lipase 5 (.1) AT1G71120 157 / 1e-44 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G45960 146 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 141 / 6e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 140 / 3e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 139 / 3e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134701 [exp] 553 / 0 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 536 / 0 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G136601 [exp] 391 / 9e-136 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G136501 [exp] 380 / 2e-131 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 379 / 8e-131 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.003G071400 [exp] 358 / 5e-123 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.013G065100 [exp] 353 / 5e-121 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.004G084366 [exp] 343 / 2e-117 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1) Potri.004G084500 [exp] 341 / 2e-116 AT5G40990 288 / 5e-95 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 258 / 3e-83 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 246 / 1e-78 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10016929 [exp] 156 / 3e-44 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10006856 [exp] 155 / 5e-44 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 146 / 8e-41 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 142 / 6e-39 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 137 / 3e-37 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040791 [exp] 136 / 5e-37 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10003720 [exp] 136 / 5e-37 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10005238 [exp] 136 / 1e-36 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G134350.1 pacid=42813114 polypeptide=Potri.017G134350.1.p locus=Potri.017G134350 ID=Potri.017G134350.1.v4.1 annot-version=v4.1 ATGGGGAGTTCAAGGTCCAGCATTTTATGTTTCTTGATGCTCTGTGCAAGTTTTCTAGTCCCAACAAGCTGCCACAGTTACTCTCATGGTGCTTTATTTA TCTTTGGAGATTCCTTTTATGATGCTGGGAATAATATTTATCTCAACACTAGCAACACTAGCCTTGCCAAACTAAATATCTTTCCATATGGAGAGACATA TTTTAAGCATCCCACAGGAAGGGTCAGTGATGCTGAATTTGCAAAGCTACCATTAATTCCACCATATTTACAACCCGGCAACCATCAATTCACAAATGGA GTCAACTTTGCATCAGGGGGAGCTGGTGCTCTCGTTGAAAATAATCAAGGACCGATTATGGGCCTTAAAACTCAATTACGTAATTTCAAGAATATGGAGA AGCAGCTAAGGAAAAAACTAGGAGCTTCAGAAATTAAGACATTGTTATCCACAGCTGTTTACATGTTCAGCATTGGAAGCAACGACTACTTGGTACCTTT CATCACAAACTCCACTCTGCTTCAATCCTACTCCAAAAAAGAGTATGTCAAGATGGTTATTGGCAACATAACAACCGTGATCCAAGAAATTTATAAGATA GGGGGAAGGAAATTTGGCCTATCAAAGTTGATTCCTTTGGGTTGTTTTCCATTCTCTCGAGCACAAAAACTATCCAGCACAGCACTCCTTGAAGCTCTTA AAGAGCTTAAGAAGAGCCAACTAAAAGGATATACTTATTCAATTTTTGATGCATACACTGCAGCAACTGCAATTTTCAATAACCCTTCAAAATATGGTTT CGAAGAGGTGAAAATGGCATGCTGTGGCAGCGGTCCATTGAGAGGCTCCTTGCTTGCTTGCGGCCTGAAAGTATACCAACTGTGCGATAACGTTAGCCAA TATTTCTTCTTTGATGAACTTCATCCAACCGAAAAGGCCAACTATCAGTTTGCAAAGCTAATGTGGGATGGGAGTCCTAAAATCGTCAAGCCTTACAACC TGAAAACACTGTTCAAGAAATAG
AA sequence Show only first row Show all	>Potri.017G134350.1 pacid=42813114 polypeptide=Potri.017G134350.1.p locus=Potri.017G134350 ID=Potri.017G134350.1.v4.1 annot-version=v4.1 MGSSRSSILCFLMLCASFLVPTSCHSYSHGALFIFGDSFYDAGNNIYLNTSNTSLAKLNIFPYGETYFKHPTGRVSDAEFAKLPLIPPYLQPGNHQFTNG VNFASGGAGALVENNQGPIMGLKTQLRNFKNMEKQLRKKLGASEIKTLLSTAVYMFSIGSNDYLVPFITNSTLLQSYSKKEYVKMVIGNITTVIQEIYKI GGRKFGLSKLIPLGCFPFSRAQKLSSTALLEALKELKKSQLKGYTYSIFDAYTAATAIFNNPSKYGFEEVKMACCGSGPLRGSLLACGLKVYQLCDNVSQ YFFFDELHPTEKANYQFAKLMWDGSPKIVKPYNLKTLFKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134350 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	5.09	0.7749
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	6.00	0.7555
AT1G14190			Glucose-methanol-choline (GMC)...		Potri.010G168200 [exp]	13.11	0.7631
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	22.80	0.7216
					Potri.004G110976 [exp]	23.06	0.6024
AT1G68300			Adenine nucleotide alpha hydro...		Potri.008G121800 [exp]	25.19	0.7582
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	26.87	0.7032
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	27.34	0.7391	MANS.2
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108300 [exp]	29.39	0.7356
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.009G031900 [exp]	30.33	0.7178

Compare expression of checked genes

Potri.017G134350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.