Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66170 728 / 0 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 553 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 363 / 5e-116 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 319 / 1e-98 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 147 / 1e-40 transcription factor-related (.1) ATMG00550 108 / 2e-27 ATMG00550.1, ORF160 unknown protein AT1G32810 52 / 2e-06 RING/FYVE/PHD zinc finger superfamily protein (.2) AT5G23610 48 / 2e-05 unknown protein AT4G10600 45 / 8e-05 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137200 [exp] 592 / 0 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 400 / 3e-130 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 304 / 4e-93 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 298 / 8e-91 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 298 / 9e-91 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 291 / 2e-88 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G137000 [exp] 52 / 8e-07 AT5G23610 276 / 1e-86 unknown protein Potri.011G152600 [exp] 50 / 6e-06 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.T012300 [exp] 48 / 2e-05 AT5G23610 257 / 2e-79 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010966 [exp] 699 / 0 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 691 / 0 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 359 / 6e-114 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 349 / 4e-110 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 277 / 1e-82 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 251 / 4e-73 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 50 / 5e-06 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G135200.1 pacid=42812864 polypeptide=Potri.017G135200.1.p locus=Potri.017G135200 ID=Potri.017G135200.1.v4.1 annot-version=v4.1 ATGTCAATACCAAATCTTGAAAATTGCAAGAAAAGGAAAAGATGGCCAAAACTCTACGATTTCAACACATTTTGTGAACCGGATTGCCCCATTAATCCTA GGGGTCCTTTCCGCGATAACATGCGGCTTTTTCTTCAACAATGTGCAGAACCTGAAGATTATAAAGTAGAGGGCATGTCCATTTGGTGTACTTTGCTTGT TATTGAAAGTAAAAACTTTGTTGTTCCACTTTACACCATTGAAGAAGATGTTAAGGAGTCAGTTAGACCCTTTTGTGATCTGTGCAGATGCAACGGTTGG AGTCACAATTCTGTTTCCAAAAGAAAGTATCATATGATAATACCAGTTGATAGCGAGTGGAGTCAGAAATTGGAGGATGGCGTTTGTGATCTACAGACAC ATCTCTTGCATGGGTTGATTCACTGTAATGGTTTTGGTCATTTACTATGCATAAATGGGAGAGAAGGGGGTTCCAAGTATCTTTGTGGCCGGGAAATCAT GGATCTTTGGGATCGTATTTGTGCAAGTCTTCGAACTAGGAAAATCACTGTTGAGGATGTATCAAAGAAGCGGTCCATGGATCTTCGCCTTCTTTATGGG ATTGCATATGGACATCCATGGTTTGGTAGATGGGGATACAAGTTTTGCCATGGAAGCTTTGGTGTGACAGAGCCCATATACTTCAAAGCAATTGAAATTC TGAGCTCTATGGAACTTGAGAAGATCATTCAAGATTTCAGTGACACGAGCCTAAGCAAAAGCATAAAGCAGATAATTCACTACTACAAAGACCTGAGTCC AACCCAGCTGATCACATTCAAAGATCTTCTTCGTTTCATGCTTGCCATCAGATCCTGTCCCTGTGTATGGAAGAAACAAAGCATGACTGCCACCACCACT TCAAAGCCTCCTATCAATATTGTTCTCCGGAGAAAGCCACTCATAAAGGAGAAATGTATGAAGTACAGAAATTTTAGCTCGTTGGTTGGTACAATGGACA GCAGATGGCCTACAAGAAGACTGCAATATGCAGCTGAAGTGATTGTGGATGCATTGAAAGCAAAGAAGGAGGACAAACACAGTCAAGAAGGAATGACTAG ACAAGACGTGAGAGATGCAGCTCGAATGCACATTGGTGATACAGGCTTGCTTGATTATGTTCTGAAATCAATGAACAATGTGGTTGTTGGAAAGTATGTT GTCCAGCGGGCAGTTAACCCAAAAACAAGGATTCTTGAATACTCAATTGACGAGTTTGGCGACGGGATTATCCCTGTCAAGTCTGAACCAGAATCTGAAA CAGTTCCGGCACAACCTCTTTTGCCTGGAGCTGATGTTAATGCTGATGTGGTCTTTGTATACGAGAATGTGCTGTTTAACTACCCAGAATCAGAATTGGT TGAAGTAGCAACTCAGGCAATTCTAGACAGCAAGCATTTTGTGAAGGAGTGGCCTTTTAGGGTTGAGAATGACCAGCTGTTGAGTTTCATATGCCAAGTG ATGCCAACTTGGAATGATCTTGAAGCTAAATTTCACAGGAAAGCTCCTCCTGGCGAGATTATCGTGCTTCCATTGCATGCTTCTGTGCTGGAACTAAAGC AAGAAGCAGAAAGTGCATTGCGAGACACATACTGCATGCTGGAGAGGTTTGTTGTTATAGAGATAGAACACATGGAAAACCTAGATGATAAGGACTTGCT GTGTAAATTTGTCGAATCCGGTGCAGAGATTTTTGTGAAAGGGTATGGCATGGACATAAATTCTCAGTTGAGGTATGAAGGTGGGTCAGATAACTGGAAA GTAAGATGTGAATGTGGGGCTTGTGACGATGATGGGGAGAGAATGGTAGAATGTGACATTTGTGAGGTGTGGCAACACACACGCTGCAATGGAATTGATG ATGCTGATACAGTACCACAATTGTTCATTTGTTCTGGATGCTGTGATTCTCTACTGCCAGGGAAAACTGAAACTCACCAGAGATTTGAGAGTTCTGATGA TTTGTTGATGATTCCTGCAGCAATTGGATATGGAGCAGAGGCTGCAGAGCCTTTTTACGAAGCAATTGGATATGGAGCAGAGGCTGCAGAGCCTTTTTAC CAAGCTTGA
AA sequence Show only first row Show all	>Potri.017G135200.1 pacid=42812864 polypeptide=Potri.017G135200.1.p locus=Potri.017G135200 ID=Potri.017G135200.1.v4.1 annot-version=v4.1 MSIPNLENCKKRKRWPKLYDFNTFCEPDCPINPRGPFRDNMRLFLQQCAEPEDYKVEGMSIWCTLLVIESKNFVVPLYTIEEDVKESVRPFCDLCRCNGW SHNSVSKRKYHMIIPVDSEWSQKLEDGVCDLQTHLLHGLIHCNGFGHLLCINGREGGSKYLCGREIMDLWDRICASLRTRKITVEDVSKKRSMDLRLLYG IAYGHPWFGRWGYKFCHGSFGVTEPIYFKAIEILSSMELEKIIQDFSDTSLSKSIKQIIHYYKDLSPTQLITFKDLLRFMLAIRSCPCVWKKQSMTATTT SKPPINIVLRRKPLIKEKCMKYRNFSSLVGTMDSRWPTRRLQYAAEVIVDALKAKKEDKHSQEGMTRQDVRDAARMHIGDTGLLDYVLKSMNNVVVGKYV VQRAVNPKTRILEYSIDEFGDGIIPVKSEPESETVPAQPLLPGADVNADVVFVYENVLFNYPESELVEVATQAILDSKHFVKEWPFRVENDQLLSFICQV MPTWNDLEAKFHRKAPPGEIIVLPLHASVLELKQEAESALRDTYCMLERFVVIEIEHMENLDDKDLLCKFVESGAEIFVKGYGMDINSQLRYEGGSDNWK VRCECGACDDDGERMVECDICEVWQHTRCNGIDDADTVPQLFICSGCCDSLLPGKTETHQRFESSDDLLMIPAAIGYGAEAAEPFYEAIGYGAEAAEPFY QA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Potri.017G135200 [exp]	0	1
AT5G10050			NAD(P)-binding Rossmann-fold s...		Potri.007G086600 [exp]	4.12	0.7739
AT3G48880			RNI-like superfamily protein (...		Potri.012G106700 [exp]	12.72	0.7606
AT3G29170			Eukaryotic protein of unknown ...		Potri.016G054301 [exp]	40.79	0.7256
AT5G15880			unknown protein		Potri.017G110300 [exp]	52.96	0.7069
AT4G17430			O-fucosyltransferase family pr...		Potri.003G079400 [exp]	53.17	0.6956
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	66.33	0.6477
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	68.11	0.7033
AT1G55810		UKL3	uridine kinase-like 3 (.1.2.3)		Potri.001G467800 [exp]	74.45	0.6721
AT2G23150		ATNRAMP3, NRAMP...	natural resistance-associated ...		Potri.007G050700 [exp]	108.62	0.6610	Pt-NRAMP3.2
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.001G050900 [exp]	109.39	0.6857

Compare expression of checked genes

Potri.017G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.