Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKOR.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 1269 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 1168 / 0 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G26650 405 / 3e-128 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G22200 365 / 1e-113 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G25600 365 / 1e-112 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 353 / 2e-108 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 298 / 1e-89 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 291 / 5e-87 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 268 / 1e-79 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G14255 78 / 1e-14 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G083300 [exp] 1550 / 0 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.012G043000 [exp] 1080 / 0 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.018G031600 [exp] 399 / 2e-125 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 393 / 1e-123 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 392 / 5e-123 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 383 / 4e-120 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 323 / 4e-98 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 295 / 4e-89 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 279 / 5e-83 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015687 [exp] 1315 / 0 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10001999 [exp] 1017 / 0 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 686 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019944 [exp] 415 / 4e-132 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 397 / 2e-125 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10019442 [exp] 387 / 3e-121 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 382 / 4e-119 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 379 / 4e-118 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 379 / 7e-118 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 360 / 3e-111 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.017G135400.1 pacid=42813628 polypeptide=Potri.017G135400.1.p locus=Potri.017G135400 ID=Potri.017G135400.1.v4.1 annot-version=v4.1 ATGGATGGTCATGGCAATCACAGAGAGAGAAACAAGAAAGAGGATTCGGACGATGATGGAGAAGAGGAATATGAAGTGGAAGATTTGAAAGACAGGATAA AATCTTCAAGAGGGAGTCGATTTAATTTGATAGAGAAGGAGTTTGGACTCGTTAATAATAATGGGTCGTCGTCGATGACAAGTTGGAGGAGAAAACTGAG TCGTGAATCGGTCATTAATGGTATTCGTTATGTCTCCTCAGGTTTCGTTATCCATCCTGATAATAGGTGGTATCGAGCATGGACAAAATTCATTCTATTA TGGGCAGTCTACTCTTCCTTCTTTACACCAATGGAGTTTGGTTTCTTCAGAGGATTACCTGAGAACCTCTTCATATTGGACATTGTTGGACAGGTTGCTT TCCTTCTTGATATCATCTTACAATTCTTCATTGCCTACAGAGATAGTCAGACTTATCGTACGGTCTATAAGCGCACTCCTATTGCTCTTCGGTATTTGAA ATCTCATTTTATCATTGATTTGCTTGCTTGCTTGCCTTGGGACATCATCTACAAGGCTTGTGGACATAGAGAAGAAGTGAGGTATCTCTTATGGATTAGG CTAAGTAGGGTGCGGAAAGTAACTGATTTTTTCCAAAAGATGGAGAAGGATATACGAATAAATTACCTTTTTACAAGGATTGTAAAGCTTATAGTAGTAG AACTCTATTGCACGCACACGGCGGCCTGCATTTTTTATCATTTGGCTACTACTCTTCCATCTTCTCAAGAAGGGTATACTTGGATTGGAAGTTTGAAAAT GGGTGATTATAGCTATACAAGCTTCAGGGAGATTGATATCTGGAAGCGGTACACAACATCTCTATATTTTGCCGTCATCACTATGGCAACTGTTGGTTAT GGAGATATACATGCTGTTAACTTGAGGGAAATGATATTTGTAATGATCTATGTGTCCTTCGACATGATTCTCGGTGCTTATTTGATCGGAAATATGACAG CATTAATAGTAAAAGGTTCGAAGACAGAAAAGTTCAGGGATAAAATGACAGATCTCATCAAATATATGAATAGAAATAGACTTGGAAAGGACATCCGAAA TCAGATCAAAGGCCATGTTCGCTTACAGTATGAGAGTAGCTACACTGAGGCTTCTGCTCTGCAGGATCTCCCCATCTCTATTCGTGCAAAGGTTTCCCAA ACTTTGTACACAGAATATATCGAAAAGGTTCCCTTACTTAAGGGTTGCTCTGCAGAATTTATTAATCAAATTGTCATCAGGCTTCACGAGGAGTTTTTTC TCCCTGGAGAAGTAATTATGGAGCAGGGAAATGTGGTAGATCAACTTTACTTTGTCTGTCATGGTGTGCTGGAAGAGGTTGGGATAGGGCAGGATGGATC AGAAGAAACTGTCAAACTCTTGCCACCTAACAGCTCATTTGGAGAAATTTCTATCCTTTGCAACATCCCCCAGCCTTATACTGTTAGAGTTTGTGAATTA TGTCGGCTTCTACGGATCGATAAACAATCTTTCTCGAACATACTTGAAATTTACTTTTACGATGGACGCAAAATTTTGGACAACCTTTTAGAGGGGAAAG AATCTAATCTTCGAGATAAGCAATTGGAATCAGATATTACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAGGGTTAATAGTGCAGCTTATCA TGGAGACCTTTATCAGCTGAAGGGCTTCATCCGAGCAGGAGCTGATCCCAATAGAACAGATTATGATGGAAGATCACCCTTGCATCTTGCAGCATCTAGA GGTTATGAAGATATCACACTTTTCCTTATTCAAGAAGGAGTTGACATTAACATCAAAGATAAATTTGGAAACACCCCCTTGTTGGAAGCTATAAAGAATG GACATGATCGAGTTGAGTCTTTACTTTTTAAACAAGGGGCTATCTTGAACATAGATGATGCTGGTAGTGTTCTGTGTAGAGCTGTTGCAAGAGGGGATTC AGATTTTCTTAAAAGAATTTTGTCCAATGGAATTGATCCAAACTCTAAAGACTACGATCATCGAACTCCACTTCATGTAGCTGCTTCAGAAGGATTATAT TTGATGGCAAAGCTGCTGATAGAAGCTGGAGCTAGTGTTTTCTCAAAGGACAGATGGGGCAACACTCCACTTGACGAGGGCCGGATGTGTGGGAGCAAGA AATTGATCAAGCTGCTAGAAGAAGCAAAATCTTCTCAGAAATTGGAATTCCATTATGGCACCCATGAGACCACAGAAAAAGTACTCCCAAAGAAATGTAC AATTTTCCCTTTCCATCCATGGGCAGAAGAACAGAGAAGACCTGGAGTGGTGTTATGGGTCCCAAACACCATGGAAGAGCTTGTAAAAGCAGCATCAGAG CAGCTACAGTTTCCTGATGGTTCTTGTATATTGTCAGAAGATGCAGGTAAAATTCTTGATGTAAACATGATTGATGGTGGCCAGAAGTTGTATCTAACTA GTGATCAAACACATTACTTATCTTGA
AA sequence Show only first row Show all	>Potri.017G135400.1 pacid=42813628 polypeptide=Potri.017G135400.1.p locus=Potri.017G135400 ID=Potri.017G135400.1.v4.1 annot-version=v4.1 MDGHGNHRERNKKEDSDDDGEEEYEVEDLKDRIKSSRGSRFNLIEKEFGLVNNNGSSSMTSWRRKLSRESVINGIRYVSSGFVIHPDNRWYRAWTKFILL WAVYSSFFTPMEFGFFRGLPENLFILDIVGQVAFLLDIILQFFIAYRDSQTYRTVYKRTPIALRYLKSHFIIDLLACLPWDIIYKACGHREEVRYLLWIR LSRVRKVTDFFQKMEKDIRINYLFTRIVKLIVVELYCTHTAACIFYHLATTLPSSQEGYTWIGSLKMGDYSYTSFREIDIWKRYTTSLYFAVITMATVGY GDIHAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHVRLQYESSYTEASALQDLPISIRAKVSQ TLYTEYIEKVPLLKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCEL CRLLRIDKQSFSNILEIYFYDGRKILDNLLEGKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGFIRAGADPNRTDYDGRSPLHLAASR GYEDITLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVESLLFKQGAILNIDDAGSVLCRAVARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLY LMAKLLIEAGASVFSKDRWGNTPLDEGRMCGSKKLIKLLEEAKSSQKLEFHYGTHETTEKVLPKKCTIFPFHPWAEEQRRPGVVLWVPNTMEELVKAASE QLQFPDGSCILSEDAGKILDVNMIDGGQKLYLTSDQTHYLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.017G135400 [exp]	0	1	Pt-SKOR.4
					Potri.007G086400 [exp]	3.16	0.9635
AT5G15180			Peroxidase superfamily protein...		Potri.007G122451 [exp]	8.30	0.9629
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.014G002500 [exp]	8.83	0.9209
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Potri.016G056800 [exp]	10.39	0.9098
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G072000 [exp]	11.13	0.9602	Pt-PT2.8,PtrPHT1-1
					Potri.017G045501 [exp]	11.83	0.9253
AT4G00910			Aluminium activated malate tra...		Potri.003G145000 [exp]	12.24	0.9558
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	16.97	0.9578
AT5G15180			Peroxidase superfamily protein...		Potri.007G122301 [exp]	18.52	0.9568
AT5G15180			Peroxidase superfamily protein...		Potri.007G122401 [exp]	20.00	0.9568

Compare expression of checked genes

Potri.017G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.