Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02860 177 / 3e-53 C2H2ZnF zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037693 [exp] 211 / 4e-66 AT3G02860 265 / 3e-87 zinc ion binding (.1.2) Lus10015686 [exp] 202 / 1e-62 AT3G02860 279 / 6e-93 zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type
Representative CDS sequence Show only first row Show all	>Potri.017G135500.1 pacid=42814427 polypeptide=Potri.017G135500.1.p locus=Potri.017G135500 ID=Potri.017G135500.1.v4.1 annot-version=v4.1 ATGGACGCAGCGAAGAAAAAGGCACTGTTTCGATCCAAACTTAACGCCCAAAGGAAAGAGAAGAAAATCGATTCTCCTCTTGTTAGGTACAATGAATTGG ATCAACCAGTTTGTAGGGTTTGCGATGTTGTTTTGAAATCTGAATTCCAGTGGGATGCTCACCAAGCTTCTCGTAAACATATTGAGGCAATAAATAACAT TAAAGCGAATGCAGCTCGATTAAAGAATGTTAACAATGCAAAATCTGAACCCTCTGCAGTGTCAACTGGATCCAAACATGCAGATAATGCTCAGCTACAA GTTGCAAAATCCGAGTCATTGACACAATTGCCCAGACCTCAGTCGGCACTTCCTCCAGATTTTTTTGATAATAAAGAGGCAAAGAGACAAAAAACTGGTG CAGATGCTGTCAAGCCATCTGAGCTAGATTCATCTTTAAAGCCAGCCGGTTCTATTCAAACTAAGGCGACACGGTCTCTCTTGGAAGATGAGACTGGTGG ATTGCCCAGTGGTAATCATCTGCAGACAAAAAATACTGAGGATGCTCGGGGGATTACAAACACACCCACACCCACACCCACTGAAATTTCTGACTCACAA GCCAAGCAAGGACAAGGAGCTCTTCCTGAAGGCTTCTTTGATAACAAGGAAGCTGATTTACGTGCTCGTGGTATTAAGCCTGTTAAGCCAGATGTCAATG ATGAGTACAAGGAATTTGAAAAGCTGATCCAAGGAGACCTGCGAGAGGTGGATGACCGCTTGGAAGAAGAGGAGGTTGATGCAGCTGAAACTATCGAAGA AGCTGAAACATTGGAGCAGAAGGCATACAGAGAAAGAGTTGAATTGTTGAAAAAAAAGAAAATGGAGTTAATGGCTGCCAGGGCGTCCGAACGCAGCAAA GGTTCTGAGGTTGCTAGCAAAGAGTCTAGCCATGAAGATTCATCCAGCGACGATGACAGTGATGTAAATTTTGCAGTTGATTGGAGAGCTCAGCATTTAT GA
AA sequence Show only first row Show all	>Potri.017G135500.1 pacid=42814427 polypeptide=Potri.017G135500.1.p locus=Potri.017G135500 ID=Potri.017G135500.1.v4.1 annot-version=v4.1 MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKHIEAINNIKANAARLKNVNNAKSEPSAVSTGSKHADNAQLQ VAKSESLTQLPRPQSALPPDFFDNKEAKRQKTGADAVKPSELDSSLKPAGSIQTKATRSLLEDETGGLPSGNHLQTKNTEDARGITNTPTPTPTEISDSQ AKQGQGALPEGFFDNKEADLRARGIKPVKPDVNDEYKEFEKLIQGDLREVDDRLEEEEVDAAETIEEAETLEQKAYRERVELLKKKKMELMAARASERSK GSEVASKESSHEDSSSDDDSDVNFAVDWRAQHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Potri.017G135500 [exp]	0	1
					Potri.006G009300 [exp]	7.34	0.9842
AT5G05800			unknown protein		Potri.014G061450 [exp]	13.96	0.9813
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.019G018900 [exp]	15.23	0.9266
					Potri.009G020201 [exp]	16.12	0.9813
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Potri.009G120600 [exp]	25.13	0.9089
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.001G033800 [exp]	25.29	0.9054
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	27.92	0.9809	GY4.2
					Potri.007G040950 [exp]	30.85	0.9807
AT2G04100			MATE efflux family protein (.1...		Potri.017G120500 [exp]	30.98	0.9804
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	31.70	0.9806

Compare expression of checked genes

Potri.017G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.