Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40990 334 / 2e-112 GLIP1 GDSL lipase 1 (.1) AT3G14225 324 / 9e-109 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53920 319 / 1e-106 GLIP5 GDSL-motif lipase 5 (.1) AT1G53990 313 / 2e-104 GLIP3 GDSL-motif lipase 3 (.1) AT1G53940 311 / 6e-103 GLIP2 GDSL-motif lipase 2 (.1) AT1G71120 190 / 1e-56 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT1G54030 169 / 3e-48 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 167 / 4e-48 GLIP7 GDSL-motif lipase 7 (.1) AT5G45950 166 / 9e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 166 / 1e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137000 [exp] 831 / 0 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G136601 [exp] 783 / 0 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G134701 [exp] 487 / 4e-173 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 455 / 2e-160 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.003G071400 [exp] 423 / 1e-147 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.013G065100 [exp] 421 / 4e-147 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.017G134350 [exp] 401 / 2e-139 AT5G40990 300 / 6e-100 GDSL lipase 1 (.1) Potri.004G084366 [exp] 384 / 2e-132 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1) Potri.004G084500 [exp] 382 / 1e-131 AT5G40990 288 / 5e-95 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 283 / 2e-92 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 271 / 8e-88 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10041877 [exp] 176 / 3e-51 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 172 / 4e-50 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006856 [exp] 168 / 2e-48 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 162 / 7e-46 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10037598 [exp] 160 / 3e-45 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 158 / 2e-44 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 157 / 4e-44 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040791 [exp] 156 / 7e-44 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G136501.1 pacid=42813137 polypeptide=Potri.017G136501.1.p locus=Potri.017G136501 ID=Potri.017G136501.1.v4.1 annot-version=v4.1 ATGAGAATTTCAAGGTCCAACATTAAGAATTGTTTCTTGGTATTTTGTGCAAGCCTTCTGGTTGCAAGAAGCTGCCATGGTTCTAAGCATGTTGCCTTAT TTATCTTTGGAGATTCATTATATGATGCTGGAAACAATAAGTACATCGAAGATGCTCCTATCTTTTCAGATTTCTGGCCATATGGAGAAACCTTCTTTAA GCATCCCACAGGAAGGCCTTGTGATGGTCGATTAATTCCAGATTTTATTGCTCAATATGCAAATCTACCTTTAATTCCGCCATATCTACAACCTGGTGAC CATCAATTTATGGATGGAGAAAACTTTGAGTCCAAAGGGGATCTTGTTCTCGCTGAAAATCTCCAAGGAATGGTGATAAGCTCTGAAATACAACAACATC TACAATCCAGTAGTCATCGATTTATAAATGGAGTGAACTTTGCATCATCTGGAGCTGGTGCTCTTGTTGAAACTCATCATGGATGGGTGATAAACCTTAG CACTCAACTAAGCTATTTCAAGCATATGAAAAGGCAGTTAAGGCTTCAACTAGGTGAAGCAGAAGCTAAAAAATTGCTGTCCACAGCGGTTTACATTTTC AGCATTGGAGGCAATGACTACTTTGCAGCTCTAACACCAACGCACAGTTTGCTTCAATTCTATTCAAGAGAAGAGTATGTTGGGATGGTTATTGGAAATA TAACAACAGTGATCCAAGAAATATACAAGATAGGAGGAAGGAGATTTGGATTGTCAACGTTGATTGCTTTGGGTTGTCTACCATCCTTGAGAGCAGCTAA ACAGGAAAAAACAGGTGTGTCAGGCTGCTTGGATGAAGCTACAATGTTTGCAAAGCTACACAACAGAGCACTCCCTAAAGCACTCAAAGAGCTTGAGGGA CAACTAGAAGGATTTAGATACTCAATTTTTGATGCCTACGTTGCTGGAAGGGAGAGAATTAATAACCCTTCAAAATATGGTTTCAAGGAGGTTCAAGAGG CATGTTGTGGCAGTGGTCCTTACAGAAGCTTCCCTACTTGTGGTCAGAAAGGATATCAATTATGCGACAATGCAAGTGAATATTTCTTCTTTGATGCGGC TCATCCAACCGAGAGTGCCAACAATCAATTTGCGAAGCTAATGTGGAGTGGAAGTCTTGACATCGTGAAGCCTTACAATCTTAAAACACTGTTTGAGGAA TAG
AA sequence Show only first row Show all	>Potri.017G136501.1 pacid=42813137 polypeptide=Potri.017G136501.1.p locus=Potri.017G136501 ID=Potri.017G136501.1.v4.1 annot-version=v4.1 MRISRSNIKNCFLVFCASLLVARSCHGSKHVALFIFGDSLYDAGNNKYIEDAPIFSDFWPYGETFFKHPTGRPCDGRLIPDFIAQYANLPLIPPYLQPGD HQFMDGENFESKGDLVLAENLQGMVISSEIQQHLQSSSHRFINGVNFASSGAGALVETHHGWVINLSTQLSYFKHMKRQLRLQLGEAEAKKLLSTAVYIF SIGGNDYFAALTPTHSLLQFYSREEYVGMVIGNITTVIQEIYKIGGRRFGLSTLIALGCLPSLRAAKQEKTGVSGCLDEATMFAKLHNRALPKALKELEG QLEGFRYSIFDAYVAGRERINNPSKYGFKEVQEACCGSGPYRSFPTCGQKGYQLCDNASEYFFFDAAHPTESANNQFAKLMWSGSLDIVKPYNLKTLFEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	0	1
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	1.41	0.9312
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	1.73	0.8773
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	3.16	0.8390
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G061700 [exp]	3.46	0.8363
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G043100 [exp]	4.00	0.8422
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G155600 [exp]	4.69	0.8115	CYP716C1
AT1G13970			Protein of unknown function (D...		Potri.010G163100 [exp]	5.65	0.8363
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	10.24	0.7809
AT3G14420			Aldolase-type TIM barrel famil...		Potri.004G065200 [exp]	13.41	0.8154
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	14.00	0.7855

Compare expression of checked genes

Potri.017G136501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.