Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40990 337 / 7e-114 GLIP1 GDSL lipase 1 (.1) AT3G14225 329 / 2e-110 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53920 322 / 6e-108 GLIP5 GDSL-motif lipase 5 (.1) AT1G53990 320 / 3e-107 GLIP3 GDSL-motif lipase 3 (.1) AT1G53940 315 / 2e-104 GLIP2 GDSL-motif lipase 2 (.1) AT1G71120 192 / 8e-58 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G15720 172 / 4e-50 GLIP7 GDSL-motif lipase 7 (.1) AT3G16370 171 / 1e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G54030 171 / 3e-49 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45950 166 / 1e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G136501 [exp] 783 / 0 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 780 / 0 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G134701 [exp] 494 / 6e-176 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 462 / 5e-163 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.013G065100 [exp] 430 / 2e-150 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.003G071400 [exp] 429 / 4e-150 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.017G134350 [exp] 411 / 2e-143 AT5G40990 300 / 6e-100 GDSL lipase 1 (.1) Potri.004G084366 [exp] 385 / 7e-133 AT5G40990 289 / 2e-95 GDSL lipase 1 (.1) Potri.004G084500 [exp] 383 / 6e-132 AT5G40990 288 / 5e-95 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 289 / 1e-94 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 279 / 8e-91 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10006856 [exp] 174 / 1e-50 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 171 / 2e-49 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028423 [exp] 167 / 3e-48 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 167 / 7e-48 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 165 / 5e-47 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10006855 [exp] 160 / 3e-45 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10040791 [exp] 157 / 2e-44 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10016918 [exp] 157 / 4e-44 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.017G136601.1 pacid=42813588 polypeptide=Potri.017G136601.1.p locus=Potri.017G136601 ID=Potri.017G136601.1.v4.1 annot-version=v4.1 ATGAGAACTTCAAGGTCCAATATTAAGAATTGTTTCTTGGTATTTTGTGCAAGCCTTCTGGTTGCAAGAAGCTGCCATGGTTCCAAGCATGTTGCCCTAT TTATCTTTGGAGATTCATTATATGATGCTGGAAACAATAAGTACATCAAAGATGCTCCCACCTTTTCAGATTTCTGGCCATATGGAGAAACCTTCTTTAA GCATCCCACAGGAAGGCCTTGTGATGGTCGTTTAATTCCAGATTTTATTGCTCAATATGCAAATCTACCTTTAATTCCGCCATATCTACAACCTGGTAAC CATCAATTTATGGATAGAGAAAACTTTGAGTCAAAAGGGGAAAATCTTCAAGGAATGGTGATAAGCTCTGAGAGACAACAACATCTACAATCCAGTAATC ATCGATTTATAAATGGAGAGAACTTTGCATCATCTGGAGCTGGTGCTCTTGTTGAAACTCATCATGGACGGGTGATAAGCCTTAGCACTCAACTAAGCTA TTTCAAGCGTATGAAAAGGCAGTTAAGGCTTCAACTAGGTGAAGCAGAAGCTAAAAAATTGCTGTCCACAGCAGTTTACATGTTCAGCATTGGAGGCAAT GACTACTTTGCAGCTCTAACACCAACGCACAGTTTGCTTCAATTATATTCAAGAGAAGAGTATGTTGGGATGGTTATTGGCAATATAACAACAGTGATCC AAGAAATATACAAGATAGGAGGGAGGAAATTTGGATTGTCAACGTTGATCGCTTTGGGTTGTCTACCATCCTTGAGAGCAGCTAAACAGGAAAGAACAGG TGTGTCAGGCTGCTTGGATGAAGCTACAATGTTTGCAAAGCTACACAACAGAGCACTCCCTAAAGCACTCAAAGAGCTTGAGGGACAACTAGAAGGATTT AGATACTCAATTTTTGATGCCTACGTTGCTGGAAGGGAGAGAATTAATAACCCTTCAAAATATGGTTTCAAGGAGGTTCAAGAGGCATGTTGTGGCAGTG GTCCTTACAGAAGCCTCCGTACTTGTGGTCAGAAAGGATATCAATTATGCGACAATGCAAGTGAATATTTCTTCTTTGATGCGGCTCATCCAACTGAGAG TGCCAACAATCAATTTGCGAAGCTAATGTGGAGTGGAAGTCTTGACATCGTGAAGCCTTACAATCTTAAAACACTGTTTGAGGAATAG
AA sequence Show only first row Show all	>Potri.017G136601.1 pacid=42813588 polypeptide=Potri.017G136601.1.p locus=Potri.017G136601 ID=Potri.017G136601.1.v4.1 annot-version=v4.1 MRTSRSNIKNCFLVFCASLLVARSCHGSKHVALFIFGDSLYDAGNNKYIKDAPTFSDFWPYGETFFKHPTGRPCDGRLIPDFIAQYANLPLIPPYLQPGN HQFMDRENFESKGENLQGMVISSERQQHLQSSNHRFINGENFASSGAGALVETHHGRVISLSTQLSYFKRMKRQLRLQLGEAEAKKLLSTAVYMFSIGGN DYFAALTPTHSLLQLYSREEYVGMVIGNITTVIQEIYKIGGRKFGLSTLIALGCLPSLRAAKQERTGVSGCLDEATMFAKLHNRALPKALKELEGQLEGF RYSIFDAYVAGRERINNPSKYGFKEVQEACCGSGPYRSLRTCGQKGYQLCDNASEYFFFDAAHPTESANNQFAKLMWSGSLDIVKPYNLKTLFEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136601 [exp]	0	1
					Potri.012G106675 [exp]	1.00	0.8956
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	3.46	0.8499
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	12.00	0.8395
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Potri.005G210300 [exp]	17.32	0.7816
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120466 [exp]	23.23	0.8270
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022250 [exp]	23.83	0.8319
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	25.23	0.7415
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	26.15	0.7507
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	26.26	0.7867
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G247200 [exp]	28.56	0.8069

Compare expression of checked genes

Potri.017G136601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.