Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55490 579 / 0 GEX1, ATGEX1 gamete expressed protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039900 [exp] 726 / 0 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1) Lus10002182 [exp] 722 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10029726 [exp] 708 / 0 AT5G55490 572 / 0.0 gamete expressed protein 1 (.1) Lus10042450 [exp] 667 / 0 AT5G55490 541 / 0.0 gamete expressed protein 1 (.1) Lus10026220 [exp] 188 / 2e-54 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G137100.1 pacid=42814200 polypeptide=Potri.017G137100.1.p locus=Potri.017G137100 ID=Potri.017G137100.1.v4.1 annot-version=v4.1 ATGGGTTCTTATAGTCAGATTTTGTTTCTCGTAATTTTAATCTCACTTACATTAAGATGTCAATCATGGGGTTGGTTCTCTTCTTCAACAGAGACTCTCT CCACTGATAATTCACAGACAAACGGTTTGCCCCGTGGTTCTGTGGTGGAATTTTCTATGAATGGTCTTAGTGATGGGAAGGGGATGAAACTGGTCGAAAA AGCCGAAAGGAAAATGGTTGGCACGAATTCTTGTTGGCAGAATGCTTACCAGAATCTCTTTGCCGGCTGCTCGCAGATTCTCGCCGTCGAGGAGAAGCGG TGGAGACTTGCTTGGCACCTTAGTGATTGCTTTCAAAAGGACTCTGGACGGCCAGCTTTCCCTTATTGTGACACAAAATCTGCCATGGTTAATTGTCTCA AAAGGTTGAATGACAATGAGCACAAGGTTTATCTTGAATTCTCACTGGAAACCAATTCTATCTGCTATCAGTTACAGGCCCATGCCTTCAACCATAAAAT GGAGAGACTGGTGAATGATCTTAAAAATTCAGCAGAATACACGGAAGAACAGTTAGAAATTATTGGAGGAAAAACACATGTCCTGTTGCAGAGATCGAAT CAAATTCAGGATTCATTGAGTTCTATTGATATTCAGGTTGAAAATGTAGCTCAAACAACGAAAGATGCAAAGGATCACATGGATGTTTTATCTAAGCACT CTGAAGCTGTTTATAAGCATTCCAAGGAAATTGCACATTCTCAATCAGAGCTTCAAGAGGGACAAGCAAAAATGAATGAAAATTTGAAGGAAGGGATGTC GATGCTTCATGATGCTTACACCAATCTGGGCCAAGAAGTAGACAATGTGAGAAACGAAGCTGTGGAAATAGAGAAGCAGATTGGCAGAGTTGGAGACACA ATGTCTTCAAAGATGGAAACTTTACAAAACTCAGCTAATGACATTGAGAACATGGCTGGGAAGTCCTTGGATAAACAGAAACAACTTCTAGATGGGCAAT CCAATGCACTTAAGGGTCTTCAACTCCTAACTCAATTTCAATCAGAAGCACTAGAAGAGAGCAGGAGTACGCTGCAACACTTTGCTGAATATGGCCATAA ACAGCAGGAAGAGCTTCTTCAGCAACAAGAACAACTTCAAAAGGTCCATGACCATTTGGTAGAAAATTCAAATTCAATATTGGCCGCTCAGGAAGCTTTC GAATCAAAGCAAGCAAGCATGTTCATTGCTCTGGAGAAGCTGTTTGCTTTGCAAAACGCTATGTTGCTTGAATCACGAATAATTAAAGCTTTCATCCTCT ACACTGCATCAATCTTTATCGTTTACATGTTCACCAGTACAAAGCAAACATATACCATAAGAGCGAGGCTTTATGTTGGTCTTGCTGCCACGTTTCTGGT AGAAGTAGCAATGCTTCGGCTCACAACAAATAGTATAGAACGACAAACATGGCTAATCAATGTGTTCAGGTTACTCTATGGGATTCTTGCCTCTATTCAG TTTCTACATGCCATTTTCACATACAGGGATTATGAAGTTTTGAATCATCACTTGATACTAAACCTAATGGATAAGATTAATGTCATGCAAAAAACTAGAG AGTTATCATGGGAAACAGATAGTGATGTTGACTGGTCTTCATGGATTCAAACTGAGTTAGCAGAAGGGGGTGACAATTTGGAAGACCCTGACTTTATGGT TCCAGAAGAAGTTGCAGAGAATTCAATTACTGCTTCCATGACAAGAACGTATGATCTTCGCTGCCGCCAGCGTCGGTGA
AA sequence Show only first row Show all	>Potri.017G137100.1 pacid=42814200 polypeptide=Potri.017G137100.1.p locus=Potri.017G137100 ID=Potri.017G137100.1.v4.1 annot-version=v4.1 MGSYSQILFLVILISLTLRCQSWGWFSSSTETLSTDNSQTNGLPRGSVVEFSMNGLSDGKGMKLVEKAERKMVGTNSCWQNAYQNLFAGCSQILAVEEKR WRLAWHLSDCFQKDSGRPAFPYCDTKSAMVNCLKRLNDNEHKVYLEFSLETNSICYQLQAHAFNHKMERLVNDLKNSAEYTEEQLEIIGGKTHVLLQRSN QIQDSLSSIDIQVENVAQTTKDAKDHMDVLSKHSEAVYKHSKEIAHSQSELQEGQAKMNENLKEGMSMLHDAYTNLGQEVDNVRNEAVEIEKQIGRVGDT MSSKMETLQNSANDIENMAGKSLDKQKQLLDGQSNALKGLQLLTQFQSEALEESRSTLQHFAEYGHKQQEELLQQQEQLQKVHDHLVENSNSILAAQEAF ESKQASMFIALEKLFALQNAMLLESRIIKAFILYTASIFIVYMFTSTKQTYTIRARLYVGLAATFLVEVAMLRLTTNSIERQTWLINVFRLLYGILASIQ FLHAIFTYRDYEVLNHHLILNLMDKINVMQKTRELSWETDSDVDWSSWIQTELAEGGDNLEDPDFMVPEEVAENSITASMTRTYDLRCRQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Potri.017G137100 [exp]	0	1
AT5G44440			FAD-binding Berberine family p...		Potri.011G162800 [exp]	9.00	0.7457
AT1G06330			Heavy metal transport/detoxifi...		Potri.011G065600 [exp]	18.54	0.7405
					Potri.010G171350 [exp]	19.79	0.7033
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.002G135000 [exp]	21.33	0.7331
AT4G23880			unknown protein		Potri.004G151000 [exp]	33.67	0.7259
AT4G20820			FAD-binding Berberine family p...		Potri.011G162732 [exp]	36.82	0.7200
AT4G27220			NB-ARC domain-containing disea...		Potri.019G002800 [exp]	39.23	0.6282
AT5G23370			GRAM domain-containing protein...		Potri.005G088300 [exp]	40.49	0.7330
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	41.89	0.6818
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.010G201700 [exp]	42.98	0.6735

Compare expression of checked genes

Potri.017G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.