Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14330 788 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 456 / 1e-152 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 455 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 431 / 1e-142 MEF22 mitochondrial editing factor 22 (.1) AT4G02750 432 / 5e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 434 / 1e-141 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 436 / 4e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 429 / 2e-139 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 419 / 6e-138 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 416 / 8e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051300 [exp] 474 / 6e-160 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 450 / 4e-151 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G021300 [exp] 449 / 4e-149 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G037600 [exp] 446 / 5e-149 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 448 / 1e-148 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 454 / 5e-148 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 447 / 8e-147 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 441 / 8e-147 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 440 / 3e-145 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 452 / 2e-151 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 441 / 1e-144 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 429 / 6e-142 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000706 [exp] 432 / 2e-141 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10024876 [exp] 430 / 3e-140 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10010385 [exp] 423 / 3e-140 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 425 / 5e-140 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 429 / 1e-139 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004987 [exp] 417 / 1e-139 AT3G46790 715 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 420 / 2e-138 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.017G137200.1 pacid=42813683 polypeptide=Potri.017G137200.1.p locus=Potri.017G137200 ID=Potri.017G137200.1.v4.1 annot-version=v4.1 ATGATTCCCGCCATTTCCGTCTTAACTAACACCCCCATCCCAACCAACTTAACTGTCATTTCATGCCCTAAATCCCAAAAACCACCCTCCAAAAACCCTC AAAATCTCAATCAAACCCTCAAATATCTAACAAAATCTGGCAATCTCGACGAGGCGATTCGCTTGATCGAATCCTCGCCGTCCAAATTTACTGATCCTGA GACTTACAGTCAGCTCTTACATTCTTGTATTTCCCAAAAATCGTTACATCATGGCCAAAGAGTATATAAACAGCTCCTTAAACAAGAATACAGCGAAAAA TTTCTTGAAAATCATAACTTAAAAGGCAAGCTAATTACCCTTTTCTCTGTATGTGGCGAACTTGATGAGGCACGCATAATTTTTGAAAATGCGGTTGAAA ATGAAGGGGTGCCGGAGTCAGTTTGGGTGGCAATGGCAATTGGGTATTCAAAAAACGGGTTCTTGAGAGAGGCTTTGCTTGTTTATGTTGAGATGTTGTG GAATTGTATGGAGCCGGGCAATTTTGCGTTCTCCACAGCGTTGAAAGCGTGTGCGGATTTGAGGGAATTGTGGGTTGGTAGAGGAGTTCATGCACAAGTG GTAAAGTCTAGTGAAGGGCCTGATCAAGTGGTGAATAACGGTCTGCTGAGGTTGTATACACAGTGCGAGTGTTTTAATGAAGTTTTGAAGGTGTTTGATC AAATGCCTGAAAGAAATGTTGCTTCTTGGAATTCTTTGATTTCTGGTTTTGTTAAAGAAGATAAATTGGGCGAGGCACTTGATGTGTTTAGAAGGATGCA AAGAGAGGGAATGGGGTTTAGTTGGGTTACACTAACTACAATTTTGCCAATTTGTGCGCGCGTGACAGCTCTTCTCAGTGGAAAAGAGATACATGCGCAA ATTGTTAAATCAGCGAGAAGGCCAGATGTCCTAGTGCTAAATTCCCTTGTGGATATGTATGTGAAATGTGGAGTTGTTGATTATGGTAGGAGATTGTTTG ATGGGATGAGAAGTAAAGACTTGACATCATGGAATACTATGTTGACTGGATATGCAATCAATGGTTATATGAGGGTGGCGATGGATTTGTTCAATGAGAT GGCTTCATGTGGGATAAGGCCGGATGATGTCACATTTATTGCACTGCTATCAGGTTGTAGCCATGCTGGGCTAACAGAAGATGGGCAGAAATTGTTTCAT AGAATGGAAATGGATTTTGGGGTCTCTCCAAGTTTAGAGCATTATGCTTGTTTGGTGGATATGTTAGGCAGAGCTGGAAGAATTGATGCTGCATTGGTGG TGGTGAAAAACATGCCCATGAAGACAAGTGGTAGCATATGGGGATCATTGCTCAACTCATGCCGCCTACATAATGAGGTCCCTCTTGCAGAGGCTATTGC AAACCGGTTGTTTGAGCTTGAGCCATATAATCCTGGGAACTATGTGATGCTCTCAAACATTTATGCAAATGCAGGGATGTGGGACTCTGTAAATATGGTT AGAGAGATGATGCAAACAAGAAGAATCAGAAAAGAGGCTGGATGTAGTTGGATACAGGTAAAGAATAAAATCCACTCTTTTGTAGCTGGTGGAGGCTTCG AGTTTCGTAATTCTGATGAATATAAGAAGATATGGAACAAATTAAGGGAAGCCATGGAAGAATTTGGTTATATACCCAACACAGATGTGGTGCTTCATGA TGTAAATGAAGAAACAAAGGCAATGTGGGTGTGTGGGCACAGTGAGCGCTTAGCAACTGTTTTTTCTCTCATACATACTGCTGCCGGAATGCCAATCAGG ATAACGAAGAACCTTCGTGTTTGTGTAGATTGTCACTCTTGGATCAAGATAGTTTCAAGAGTGACAGGGAGGGTCATTGTTTTGAGAGATACAAACCGCT TCCACCATTTCAAAGAAGGTGCATGCTCTTGTAATGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.017G137200.1 pacid=42813683 polypeptide=Potri.017G137200.1.p locus=Potri.017G137200 ID=Potri.017G137200.1.v4.1 annot-version=v4.1 MIPAISVLTNTPIPTNLTVISCPKSQKPPSKNPQNLNQTLKYLTKSGNLDEAIRLIESSPSKFTDPETYSQLLHSCISQKSLHHGQRVYKQLLKQEYSEK FLENHNLKGKLITLFSVCGELDEARIIFENAVENEGVPESVWVAMAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQV VKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKEIHAQ IVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFH RMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMV REMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIR ITKNLRVCVDCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14330			Tetratricopeptide repeat (TPR)...		Potri.017G137200 [exp]	0	1
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	4.00	0.9458
AT1G33330			Class I peptide chain release ...		Potri.019G063800 [exp]	4.89	0.9423
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	5.91	0.9501
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	14.17	0.9427
AT5G08340			Nucleotidylyl transferase supe...		Potri.007G075500 [exp]	17.43	0.9261
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	18.49	0.9348
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	20.97	0.8945	Pt-HLS3.1
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Potri.012G115800 [exp]	23.21	0.9343
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	26.49	0.9269
AT5G15300			Pentatricopeptide repeat (PPR)...		Potri.017G086100 [exp]	26.94	0.9112

Compare expression of checked genes

Potri.017G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.