Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66130 383 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09670 372 / 2e-128 Oxidoreductase family protein (.1) AT1G34200 325 / 4e-110 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200200 [exp] 398 / 1e-138 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1) Potri.005G200300 [exp] 396 / 8e-138 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013633 [exp] 363 / 1e-124 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10005674 [exp] 358 / 1e-122 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1) Lus10001327 [exp] 353 / 6e-121 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) Lus10002180 [exp] 287 / 4e-96 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039898 [exp] 252 / 6e-83 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020317 [exp] 0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01408 [poplar] [flax] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Potri.017G137300.1 pacid=42814617 polypeptide=Potri.017G137300.1.p locus=Potri.017G137300 ID=Potri.017G137300.1.v4.1 annot-version=v4.1 ATGGCTGAAAATCTAGTAAATTTTGGTATCCTAGGATGTGCCAAAATAGCAATTAAATTGGCAAGAGCCATAAACTTAGCACCCAATTCAATTCTTTATG CTATCGCAAGTCGCTCCATAGAAAAGGCCAAGCAATTTGCCATACAAAATGGATTGCCAGAGACAATCAAGATTTACGGTAGCTATGAAGAATTACTTGA TGATCCATCCATCGAAGTTGTTTACTTGCCATTGCCAACTAGTCTTCATGTTCAGTGGGCAGTCTTGGCTGCCCAAAAGAAGAAGCATGTGTTGTTAGAG AAGCCAGCTGCACTTGATGTGGGAGATTTGGACAAGATTCTGGAAGCCTGTGTATCAAATGGTGTGCAATTCTTGGATGGCTCAATGTGGTTGCACCATC CAAGAACTATGAAGATGAAGGAGCTACTCTTTGATTCCAATCATGTTGGACAAGTGAACTTCATTCATAGCACGTCAACAGCTAAAATGCCTCCTGAATT CTTTGAGAACAATATTAGAGTGAAGCAGGATATGGATGCTCTTGGTGTACTTGGTGATCTGGGCTGGTATTGCGTCGGAGCAGTCTTGTGGGCAAAAAAT TACCGATTACCAAATGTTGTATCTGCTTTACCAGCTGGTGTGACCAAGAACTCAGCTGGAATCGTTTTATCATGCACAGCCTGCTTGAACTATGATCAAG ATCACAAGACAGTCGCAATTATTCACTGCTCTTTCTTCTCCTATACATCCATGGACTTGTCGATCACCGGTACTAAAGGATCCTTGCATCTCAAGGATTT TGTCATTCCTTATCAAGAGGGTTCTGCTTTTTTTGACTTGGCATCACCAGCAACGTTCATGGATGATCAAACTGGATGGAATGTGAAAACTGAAAAAGTG GTGGTGGATAATGAAACTCCTCAAGAGGCCTTGATGGTTCAAGAGCTTGCTAGGCTAGCGCAGGGCATTAAGAAATGCGGGTTCCCGCCGGATAACAGAT GGCCTGAAATCAGCAGAAAGACTCAAATAGTGGTGGATGCAATTAAGAAATCTATTGATCTTGATTGCAAACCCGTGTACCTGTGA
AA sequence Show only first row Show all	>Potri.017G137300.1 pacid=42814617 polypeptide=Potri.017G137300.1.p locus=Potri.017G137300 ID=Potri.017G137300.1.v4.1 annot-version=v4.1 MAENLVNFGILGCAKIAIKLARAINLAPNSILYAIASRSIEKAKQFAIQNGLPETIKIYGSYEELLDDPSIEVVYLPLPTSLHVQWAVLAAQKKKHVLLE KPAALDVGDLDKILEACVSNGVQFLDGSMWLHHPRTMKMKELLFDSNHVGQVNFIHSTSTAKMPPEFFENNIRVKQDMDALGVLGDLGWYCVGAVLWAKN YRLPNVVSALPAGVTKNSAGIVLSCTACLNYDQDHKTVAIIHCSFFSYTSMDLSITGTKGSLHLKDFVIPYQEGSAFFDLASPATFMDDQTGWNVKTEKV VVDNETPQEALMVQELARLAQGIKKCGFPPDNRWPEISRKTQIVVDAIKKSIDLDCKPVYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66130			NAD(P)-binding Rossmann-fold s...		Potri.017G137300 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	4.89	0.9003
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	8.71	0.9173
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105400 [exp]	10.19	0.9114
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	20.71	0.9033
AT4G05160			AMP-dependent synthetase and l...		Potri.004G102000 [exp]	22.97	0.8880	Ptr4CL8
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	26.98	0.8737
AT5G47860			Protein of unknown function (D...		Potri.001G072400 [exp]	27.92	0.8968
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	29.08	0.8654
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	31.41	0.9004
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	33.10	0.9033

Compare expression of checked genes

Potri.017G137300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.