Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 682 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 118 / 1e-26 ARM repeat superfamily protein (.1) AT2G16960 50 / 7e-06 ARM repeat superfamily protein (.1.2) AT2G16950 44 / 0.0008 ATTRN1 transportin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082601 [exp] 1023 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 715 / 0 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 699 / 0 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 684 / 0 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 616 / 0 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 255 / 8e-78 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 211 / 3e-62 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 139 / 4e-33 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 128 / 1e-29 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 597 / 0 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 566 / 0 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 133 / 4e-31 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 130 / 3e-30 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G137400.2 pacid=42813773 polypeptide=Potri.017G137402.1.p locus=Potri.017G137400 ID=Potri.017G137400.2.v4.1 annot-version=v4.1 ATGGTATCCACTACTTCATCATCATCACCACCGCGTCGAGTTTCAGCTAGGCCACCATCACGCTCCCTTCTGCCTTTGCGCTTCAAGGCCAAACTACTTC CAGGCCGCGGAAACCCGAGTAAATCAAGAAACTGGTCACGGCCATCACCATCAAGACTAGGACCATCATCATTGAGCTCACAGGAGTCACCATTACCCTT AGTTTCTCCACTGTCGCGATCATCCCCGTATTTAACCAGGGATTATCTCAGAAGTAAAGCCATACAAGTCCTGGAGTCACCAGATGCTTTACCTCTTACT TATTTTCTTAATGAACTTAACTTCCCTGAAAACTCCATTGATTTAATGAATGCCCGAAAACTCTTGAATTATCTTAAAAAGAACTACCTTACTTCCTTCT GTCTTTGCCTTGTTTCTTACTTGAAATTTTGCGCCACTGAATTTGTGAATTGCAAGGAATATGCCTTTGATGTCCTATGCCAGATTCTTACAGAAAATGA GCATGGTCTTTGGCAGGAAACCTCCTTCATGAATAAAGAACTCAAATCTGCCCTTCTTGATTGTTTGAATACAGAGAGTTCAATAAAGATCTTGCATAAA ATTCTCGATTTTGTCGTCACCATTGCTACTAAAGAAGTAAGACTTGGAAATGAATGGCCTGAGCTTCTTGAGTTTGTTTATAAATCTATTGGTTCTGATT CTGATTCTGAAGAGAAATTGAAGTGTGCGATTTCTATGCTTTATAAGTTGATCCCACAATGTGCTGTCGAAGATTTGGTTATTAGTATTGATTCCTTTTA TGATAGTTTAGTGGATATATTTGATTCTAAAGAAATGAGTTTAGAGGTACAGGTTCAGGCAGCTCTTGCCTCAAATCGTTTTCTTTGTTACTGGACGAAT CGGTCGGACCATGATATATATAGTACTGTCCTTTTGGTTGAAATAGTGTTGATCATTTCCACTTTGATCGAGCATAGATCAGACAAAGATATACAGGCGG TGGTCAATGAATTGACTGTGTTGGCAAAGGAGAAGCCATGGTCTTTGAGTAGCCAATTTGATTATCTGGTTCTATCTGTGCTTAGGATCGTGGATGGAGT TGAACTTCAAGACAGAACAAAAATTATTGCATTAGAATTTGTGGTTGCTTTATCTGAAAAAAGAGTTGAAGGTCGACGAATGTTGCGAAGAACACAATAT ATAATCCCAAAGTTACTTGAAAAGATTCTGTTTCTGCTTGCAAATTTAGAAGATGACCCAGAAAGCGGAACTGCAGAGACTGACATTCAGAATCTGCCTG TGGTAAGGTGCTTGGCTAGAATTGCAGCTGCCTTAGGTGGGGAAGTTCTCGTGAATAATTTCCCCAAATTATTTGCAATTCATTTTGGCGCTGAAGATTG GCAGAGCCGCCATGCTGCTGTTCTTTTCCTTGGCATTGTTGCAGAGAAATGTTCAAAGCCAAAGGAGTTGAAACATGGTTGGAATCAAATGGCAGGAAGA ATTATCAGAAGTGTCAAAGAAGACATACACCCTCATGTGCGTTGGGCAGCTTTATATACAATAAAACAATTATCCAAGCATCTGAAACCTGAATTTCAAG ACAAGTATCATGAAAAGGTGATGCCTGCATTAACCAAAGCCATGGATGATTTCAATAATCCCCGTGTTCAGATGCAAGCTTATTTAGCGCTGTTCGACTT CACCTGGAACTGTTCTTCAAGTACTCTGAAACCTCACCTGAAGGAAATTGTCAACAAATTGCTCAAACAATTACAGACACTACTGTTTATAATGCAGAAA GTAAATCATATGGTCCAGGGCGAAACTTTAAAAGTTTTGTCAGCAGTAGCTCATTCATCACAGGATCACTTTGCAGAGTATTATAGTAGTGTCATGCCTT ATCTTAAAGTTATAATGATGACTGCAAATGAAGAACTTGACCACAAGCATCTTGCCGATTCCGTGGAGTGCATAACTATGGTTTGGTTGGCTGTAGGAAA GGATAAGATCAGATCTGATATTGAAATGGTTGTGCAATTGCTCCTCTCTTTACAAGGATCAAAATTAGAGGAAAATGATCCAATGAGAAGTCAACTGTTG CAAGCATGGGCCAGACTCGGGAAATGCTTGGGACATGAATTCAAACCTTATATGAGTGTTGCCATTCCGCGGTTGCTTAAATCTGCTAAAATTGGATCAT ATGTCATTATACCTGAGAATCCTGACGATGTTGATGAATCGGATGGCAGTATCAGGGCCCTGATTGTTGGAGATAGAAAGATTTGGATCAAAACTAAGGT CCTGGAGGAGAAACTCACAGCTTGTAAAGGGCTGTATTTACTGGCTGATGAGTTGAAGCAAGGCCTTTCGGTATGGATTGAAAAGGTTGCTCGGACTTTA GTTCCACGTCTCAAATTTGCACACAGTGAAGAAATCCGAAGAGTTGCTGCTTCAGCCATGCCAGTGCTATTAAAATCATCTAAAGTAGCAACACAAGAAG GGTATCTTGAGTGGTCTGCTGACGAATCTCCTTTTAAGAAGTTATACTCTTATGTGGTACCGGCTCTGGTTAAAGCTCTAAGTATGGAATCATTGCTTGA GATTACGGCAGTAATTTTGGACTCATTGGATGAATGCATGAAGATGTCTGAACATGTACTAGATGAAGACCAGACTGACCTGTTCTTAAAAGCGATAATG AATGTTCTGCAAAAGATTTCATCTCTTTCAAGAAGCAAAGTTGGGGCTATTGAAGGAATAAATCAGACATTACCAGATGAGGAAAATGGGGAAGAACAGA AAGTTTATGACAAAGCGGCTGCTTGTTTGACCACTTTCATCATAACACACAAGAACTCTTTCTCACCATTCATCGGCAAGCTTGCGCCATGCATAGAACT TATGTGGGTAAAGGATAGAATAGTCGAAGAGCGAAGAATTGCCTTGCATGTATTTTGTGATGTTGCGAAGCAATTCCAAGAAGAAGCATTTAGGCGGTGC AAGATTAGTCTTCTATTTCTGTTTAAAGCATGCAAGGATGAGAACCCCGAAGTTCAAGAGGTAGCTGCGCAGGCAATTGGTACAGCGGCAGAGTTTGGTG GGTCTGTATTCAAGTCTTTTCTTAAAGGGGCTGTTTCTGCTTTAAATGCGGTTATGGGGCATCCTAACGCATTGCAGATGGAATATGTAATGGCCCATGA TACTGCCGTTTCTGCTCTAGGAAAAATTTTGCAGTTCCATCGTGAAAAACTCAAAGCGGAAAAGGTTTTGAGGATATGGTTAGGCCATTTGCCACTGAAA AATAATCTAGAGGAGGCCAAAGTTGTTCATCGGCAGCTATGTTCATTGGTTGAAGTGTCAGATGGGGAACTTCTAGGCACCCAAAAGGCTTATCTTTCCG AAATTGTTGCTGTTTACGCCGAGATCCTGTGGGCAGGCAAGAAGTTAGCTACTGAGGAAACTGTAAACCAAATGATCAAGCAATTGAAACTTCACAGTAG AAGGTCACCCCCTTCTACCTGGAGATCTATCATGCTCTCCCTGGAACCCCATCTGCAGAAGAAGTTGGAATCCATATTGTTATCCTAG
AA sequence Show only first row Show all	>Potri.017G137400.2 pacid=42813773 polypeptide=Potri.017G137402.1.p locus=Potri.017G137400 ID=Potri.017G137400.2.v4.1 annot-version=v4.1 MVSTTSSSSPPRRVSARPPSRSLLPLRFKAKLLPGRGNPSKSRNWSRPSPSRLGPSSLSSQESPLPLVSPLSRSSPYLTRDYLRSKAIQVLESPDALPLT YFLNELNFPENSIDLMNARKLLNYLKKNYLTSFCLCLVSYLKFCATEFVNCKEYAFDVLCQILTENEHGLWQETSFMNKELKSALLDCLNTESSIKILHK ILDFVVTIATKEVRLGNEWPELLEFVYKSIGSDSDSEEKLKCAISMLYKLIPQCAVEDLVISIDSFYDSLVDIFDSKEMSLEVQVQAALASNRFLCYWTN RSDHDIYSTVLLVEIVLIISTLIEHRSDKDIQAVVNELTVLAKEKPWSLSSQFDYLVLSVLRIVDGVELQDRTKIIALEFVVALSEKRVEGRRMLRRTQY IIPKLLEKILFLLANLEDDPESGTAETDIQNLPVVRCLARIAAALGGEVLVNNFPKLFAIHFGAEDWQSRHAAVLFLGIVAEKCSKPKELKHGWNQMAGR IIRSVKEDIHPHVRWAALYTIKQLSKHLKPEFQDKYHEKVMPALTKAMDDFNNPRVQMQAYLALFDFTWNCSSSTLKPHLKEIVNKLLKQLQTLLFIMQK VNHMVQGETLKVLSAVAHSSQDHFAEYYSSVMPYLKVIMMTANEELDHKHLADSVECITMVWLAVGKDKIRSDIEMVVQLLLSLQGSKLEENDPMRSQLL QAWARLGKCLGHEFKPYMSVAIPRLLKSAKIGSYVIIPENPDDVDESDGSIRALIVGDRKIWIKTKVLEEKLTACKGLYLLADELKQGLSVWIEKVARTL VPRLKFAHSEEIRRVAASAMPVLLKSSKVATQEGYLEWSADESPFKKLYSYVVPALVKALSMESLLEITAVILDSLDECMKMSEHVLDEDQTDLFLKAIM NVLQKISSLSRSKVGAIEGINQTLPDEENGEEQKVYDKAAACLTTFIITHKNSFSPFIGKLAPCIELMWVKDRIVEERRIALHVFCDVAKQFQEEAFRRC KISLLFLFKACKDENPEVQEVAAQAIGTAAEFGGSVFKSFLKGAVSALNAVMGHPNALQMEYVMAHDTAVSALGKILQFHREKLKAEKVLRIWLGHLPLK NNLEEAKVVHRQLCSLVEVSDGELLGTQKAYLSEIVAVYAEILWAGKKLATEETVNQMIKQLKLHSRRSPPSTWRSIMLSLEPHLQKKLESILLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.017G137400 [exp]	0	1
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.005G156250 [exp]	5.74	0.8442
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.007G087401 [exp]	7.07	0.8473
					Potri.004G179822 [exp]	10.95	0.8112
AT4G27360			Dynein light chain type 1 fami...		Potri.004G034000 [exp]	10.95	0.8250
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020500 [exp]	11.66	0.8346
AT3G26740		CCL	CCR-like (.1)		Potri.014G145500 [exp]	23.62	0.8034
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.013G103551 [exp]	26.72	0.8045
AT1G61120		TPS4, GES, TPS0...	TERPENE SYNTHASE 4, GERANYLLIN...		Potri.004G037900 [exp]	28.72	0.7300
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Potri.009G045601 [exp]	29.69	0.8230
					Potri.018G011950 [exp]	34.35	0.8320

Compare expression of checked genes

Potri.017G137400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.