Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03820 462 / 8e-161 nonsense-mediated mRNA decay NMD3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085700 [exp] 669 / 0 AT2G03820 694 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Potri.004G121500 [exp] 667 / 0 AT2G03820 710 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025109 [exp] 563 / 0 AT2G03820 763 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1) Lus10023975 [exp] 560 / 0 AT2G03820 767 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04981 [poplar] [flax] NMD3 NMD3 family
Representative CDS sequence Show only first row Show all	>Potri.017G137500.1 pacid=42814235 polypeptide=Potri.017G137500.1.p locus=Potri.017G137500 ID=Potri.017G137500.1.v4.1 annot-version=v4.1 ATGGCCGAAGAAGCAGGCATGTTTATGGTTCTTCAGACAATTGGAAGTAAGCATGTGATCCTTGTACATTGCCCCGAGTGTGATACCTGCTTGGATCCAC CAACTACGGGGATTAGGGCTCAATTAGAATCAAGGGAGTTGATGGAATTTTGTCTGAAGAAGTTGAAGTTGAAGTCGGAAGGGGTTAATTTGGTAAATGC GGAATTTATTTGGACTGAACCTCATTCCAAGAGGATCAAGCTCCGGGTGAGAGTTCAGAAGGAGGTCCTTAATGGTGCAATACTTGAACAAGCATATGTT GTTGAGTATGTTCAGCAGGAACACATGTGTGATTCTTGCACAAGAGTTCAGGCCAATCCTGATCAATGGGTTGCTGCTGTCCAGCTCCGGCAGCATCTGA TTTTGAAGCATGATGCTGCTGTCCGTGCTATTAAAATCAAGCAAATGGATCATGGTATTGATTTTTTCTTTGGAAACCGTAGCCATGGTGTTAAATTTGT TGAGTTTGTGGGTAAAGTAGCTCCAGTAAGGAGTCGCAATGACAAGCAACTTCTTTCCCATGATACTAAGAGCAACAACTACAATTACAAATATACTTTC TCGGTTGAAATCTCTCCAATTTGCCGTGAGGAATTAATCTGCTTGTCTCCAAGAGTTGCTGTTGGCTTGGGGAATCTAGGTCCTCTTGTGATCTGCACAA AAGTCACAAACAGCATTGCGTTGTTAGATCCTTTCACTCTGAGACAGTGCTTCTTGGACCAGTATTGGAGAACACCCTTTAATATATTGTATTTGATGTG GATGGACATTGTTTCCCCTGAAGTTAATGTTGGTGGCTCTAGATGTGCTTTAGCTGATGCCCAAGTTGCTCGTGTGTCAGATTTTGGGAAGAATGATACC ATGTTCTACATAAAAACGCATCTGGGACATATTCTGAAACCTGGTGATTATGCTCATGGTTATGACCTTCATGGAGCTAACAGTAATGACATGGAGCTCA ACAAGTACAGAGATTTAGCCATTCCGGAATTAATCTTGGTAAAGAAGAGCTATGAAGAGAAGCGCCACAGAAAACGGGGGAAGCCTCGTAGAGGTGATGA GGAGAAGATGAACTCGGAGTATGAACAGTTCTTGAGAGATCTGGAAGAGAACCCTGAGTTGAGGTTCAATATATCATTGTATCGTAACAAAGAATATCAA CCTTCTGACTGGTGGGGATGA
AA sequence Show only first row Show all	>Potri.017G137500.1 pacid=42814235 polypeptide=Potri.017G137500.1.p locus=Potri.017G137500 ID=Potri.017G137500.1.v4.1 annot-version=v4.1 MAEEAGMFMVLQTIGSKHVILVHCPECDTCLDPPTTGIRAQLESRELMEFCLKKLKLKSEGVNLVNAEFIWTEPHSKRIKLRVRVQKEVLNGAILEQAYV VEYVQQEHMCDSCTRVQANPDQWVAAVQLRQHLILKHDAAVRAIKIKQMDHGIDFFFGNRSHGVKFVEFVGKVAPVRSRNDKQLLSHDTKSNNYNYKYTF SVEISPICREELICLSPRVAVGLGNLGPLVICTKVTNSIALLDPFTLRQCFLDQYWRTPFNILYLMWMDIVSPEVNVGGSRCALADAQVARVSDFGKNDT MFYIKTHLGHILKPGDYAHGYDLHGANSNDMELNKYRDLAIPELILVKKSYEEKRHRKRGKPRRGDEEKMNSEYEQFLRDLEENPELRFNISLYRNKEYQ PSDWWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03820			nonsense-mediated mRNA decay N...		Potri.017G137500 [exp]	0	1
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	3.87	0.8618
AT1G36990			unknown protein		Potri.002G089100 [exp]	5.09	0.8587
AT1G26650			unknown protein		Potri.008G091500 [exp]	5.47	0.8286
AT3G15351			unknown protein		Potri.002G142100 [exp]	6.92	0.7819
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G087500 [exp]	7.07	0.7972
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	10.19	0.8389	Pt-ATTIM23.1
AT1G03910			unknown protein		Potri.006G118700 [exp]	11.40	0.8383
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	15.00	0.8134
					Potri.004G111050 [exp]	15.58	0.8242
					Potri.011G062950 [exp]	19.62	0.8248

Compare expression of checked genes

Potri.017G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.