Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66070 194 / 2e-62 Translation initiation factor eIF3 subunit (.1.2) AT5G37475 186 / 3e-59 Translation initiation factor eIF3 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082200 [exp] 226 / 6e-75 AT1G66070 175 / 8e-55 Translation initiation factor eIF3 subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028057 [exp] 207 / 2e-67 AT5G37475 226 / 3e-75 Translation initiation factor eIF3 subunit (.1) Lus10008317 [exp] 183 / 5e-57 AT5G37475 209 / 4e-67 Translation initiation factor eIF3 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08597 [poplar] [flax] eIF3_subunit Translation initiation factor eIF3 subunit
Representative CDS sequence Show only first row Show all	>Potri.017G138300.3 pacid=42813249 polypeptide=Potri.017G138300.3.p locus=Potri.017G138300 ID=Potri.017G138300.3.v4.1 annot-version=v4.1 ATGGAGGATTGGGAGGATGTGCAAGTTCGACATCTCCTTTCAAAAGAGCAGCCTAAAAATAAATGGGATGATGAAGATGTGGATGAAGATGATGTGAAAG AATCGTGGGAGGATGAAGATGAACCAGCTCCGGCACCAGTAGTGAAACCTCCTCCTGAAAATGCTCCTAATAAATCCGCAGCAAAGTCTACCGAAAAGAA GGGAAAAACTGTTCAGGTGCTAAAGGAAGAGAAACTAGATCCACTAGCTGAGAAACTTCGCCAGCAAAGGCTGGTGGAAGAAGCTGATTTCAGATCCACT ACAGAACTGTTTGCTAAGAAAGGTGATGAGAAATCGCTTGATAGTTTCATACCAAAATCTGAAAGTGACTTCTTGGAATATGCAGAACTTATTTCACATA AGCTTCGCTCATTTGAGAAAAGTTACCATTATATCGGTTTACTTAAGGCAATAATGAAACTGTCCATGACTGCCATGAAAGCTGCAGATGCAAAAGAAGT TTCGGCTTCTGTGAGTGCAATTGCAAATGAAAAGATAAAAGCTGAGAAAGAAGCCAACGTTAGCAAAAAGAAGCAAGCTGGGAAGAAAAAACAGCTTCAT GTTGATAAGCCCGAAGATGATTTGGTGGTTAATCCCTATGATGCTCTCGATGATGTTGATTTTATGTAA
AA sequence Show only first row Show all	>Potri.017G138300.3 pacid=42813249 polypeptide=Potri.017G138300.3.p locus=Potri.017G138300 ID=Potri.017G138300.3.v4.1 annot-version=v4.1 MEDWEDVQVRHLLSKEQPKNKWDDEDVDEDDVKESWEDEDEPAPAPVVKPPPENAPNKSAAKSTEKKGKTVQVLKEEKLDPLAEKLRQQRLVEEADFRST TELFAKKGDEKSLDSFIPKSESDFLEYAELISHKLRSFEKSYHYIGLLKAIMKLSMTAMKAADAKEVSASVSAIANEKIKAEKEANVSKKKQAGKKKQLH VDKPEDDLVVNPYDALDDVDFM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37475			Translation initiation factor ...		Potri.017G138300 [exp]	0	1
AT1G48900			Signal recognition particle, S...		Potri.016G112800 [exp]	1.41	0.7709	SRP.3
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Potri.008G195500 [exp]	8.06	0.7712
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	10.39	0.7193
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.005G020400 [exp]	17.54	0.7327	ALPHA.10
AT4G38870			F-box and associated interacti...		Potri.008G144000 [exp]	19.89	0.7126
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	23.08	0.6745
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	35.09	0.6634
AT4G21192			Cytochrome c oxidase biogenesi...		Potri.004G227500 [exp]	36.44	0.7043
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	46.17	0.6922
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	51.16	0.6324

Compare expression of checked genes

Potri.017G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.