Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54230 168 / 2e-46 SUA suppressor of abi3-5 (.1.2) AT1G49590 44 / 0.0001 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138500 [exp] 412 / 5e-136 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.004G081800 [exp] 360 / 3e-116 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.001G205700 [exp] 50 / 8e-07 AT5G09390 280 / 3e-91 CD2-binding protein-related (.1.2) Potri.009G105500 [exp] 44 / 0.0001 AT1G49590 221 / 2e-72 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010955 [exp] 238 / 1e-70 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 159 / 4e-43 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10039947 [exp] 42 / 0.0004 AT4G34140 350 / 4e-116 D111/G-patch domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G138401.1 pacid=42813228 polypeptide=Potri.017G138401.1.p locus=Potri.017G138401 ID=Potri.017G138401.1.v4.1 annot-version=v4.1 ATGATGCTGCTGGACGGGCACCCAAGGGAACATAGCCCAGATGACAATCAATCTGCTGGTGGGCAGGAGCAAGCCGGTGGGGAGATTACAGTTCAAAAGG ATGGTTCTGCACCACAATCTGGTTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCGGGCTTCTACTTTGATGGAAATACAGGTCTTTA TTATGATGGCAATCAAGGGGTTTGGTACTCTTATGACCAGCAAACTCAGCAGTACATCCCTTTCACAGATAACAATGACAATAAAGCATCTAGTAATCAG TCTGAGAATTCCAAGTCATCTGACGGTTCCAGTAACAGAAAAGTAGTAATTTCTGCTCCAGCTGCAACAATTACATCCACAGAGAAGGCTGCCTCATTAC CTGATGCTGTCCAGGCTGCTGCTTCAGCAGCATTAGCTGCAGAGAAAAAAGAGAAGGAGAAAGCAAAAGAGATAAAACTTGCTTCAAAGAGCAGTATTTT GGCTACCAAGAAGAAAATGAACAATGTATTAACAATGTGGAAGCAAAGGAGTCATGAAGGACAGACTACCCGTGTGGCTCTTGATGATAGTCATCCATCT ACTCCAGCTGATGACAGGTCGTTTTCAGTTGGGCAATCCACAAAGAAGAAGTTTAAATCTGATACAACAACCACAAAGAAGAGCTCTATGTCCAGTTCAG GAGTAGTCACAGCTCCATCTGCCCAAACTAATGGTTTGGAGTCTTCAGTCAAGCCAAGACCTGTGAGCAACAGCTCAGGAGGGACTTTGATGGGGGTTAT AAGGGGTTCTGGACGAGGTGTTTTGAAGTCTGATACTTCATATTCTGGACCATCTGCTGGTGTTTCTACATCCAATGCTGCTGTACATCTAACCATGGCA GGTTCGTCAACAAATGCAGATACATCTTCTTTTGCAACTCCTTTTAGGACATATATATATATCTGCATTGGGCTCTTACACACCACCTGTGGCTGCTGGG AGTGGCAAGAGGAGATTTTCTGA
AA sequence Show only first row Show all	>Potri.017G138401.1 pacid=42813228 polypeptide=Potri.017G138401.1.p locus=Potri.017G138401 ID=Potri.017G138401.1.v4.1 annot-version=v4.1 MMLLDGHPREHSPDDNQSAGGQEQAGGEITVQKDGSAPQSGFVWDEASGYYYDAASGFYFDGNTGLYYDGNQGVWYSYDQQTQQYIPFTDNNDNKASSNQ SENSKSSDGSSNRKVVISAPAATITSTEKAASLPDAVQAAASAALAAEKKEKEKAKEIKLASKSSILATKKKMNNVLTMWKQRSHEGQTTRVALDDSHPS TPADDRSFSVGQSTKKKFKSDTTTTKKSSMSSSGVVTAPSAQTNGLESSVKPRPVSNSSGGTLMGVIRGSGRGVLKSDTSYSGPSAGVSTSNAAVHLTMA GSSTNADTSSFATPFRTYIYICIGLLHTTCGCWEWQEEIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	1.41	0.9562
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	2.00	0.9494
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	2.23	0.9474
AT1G21280			unknown protein		Potri.004G133001 [exp]	3.74	0.9459
AT1G22970			unknown protein		Potri.010G117100 [exp]	3.87	0.9369
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	4.24	0.9463
AT4G14600			Target SNARE coiled-coil domai...		Potri.002G102400 [exp]	4.24	0.9447
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	4.69	0.9443
AT1G21280			unknown protein		Potri.006G109250 [exp]	5.65	0.9359
AT3G14172			unknown protein		Potri.003G070400 [exp]	6.92	0.9271

Compare expression of checked genes

Potri.017G138401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.