Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54230 857 / 0 SUA suppressor of abi3-5 (.1.2) AT4G34140 61 / 4e-09 D111/G-patch domain-containing protein (.1.2.3) AT5G61030 57 / 3e-08 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT5G26610 57 / 3e-08 D111/G-patch domain-containing protein (.1.2.3) AT5G64200 54 / 2e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT4G00830 54 / 4e-07 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G54580 50 / 9e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13570 52 / 1e-06 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT3G57910 50 / 2e-06 D111/G-patch domain-containing protein (.1) AT1G55310 50 / 2e-06 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081800 [exp] 1501 / 0 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 413 / 6e-136 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.001G319900 [exp] 56 / 6e-09 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.002G197500 [exp] 59 / 9e-09 AT4G34140 353 / 4e-117 D111/G-patch domain-containing protein (.1.2.3) Potri.011G130300 [exp] 54 / 3e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 52 / 1e-07 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G165400 [exp] 54 / 3e-07 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 52 / 4e-07 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.006G208500 [exp] 50 / 7e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010955 [exp] 1037 / 0 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 543 / 6e-177 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10014802 [exp] 61 / 3e-09 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 59 / 8e-09 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039947 [exp] 57 / 6e-08 AT4G34140 350 / 4e-116 D111/G-patch domain-containing protein (.1.2.3) Lus10010042 [exp] 56 / 2e-07 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10031446 [exp] 53 / 8e-07 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010370 [exp] 54 / 9e-07 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10001513 [exp] 52 / 9e-07 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10021154 [exp] 51 / 2e-06 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.017G138500.9 pacid=42814224 polypeptide=Potri.017G138500.9.p locus=Potri.017G138500 ID=Potri.017G138500.9.v4.1 annot-version=v4.1 ATGGATCCTGGTCGCTATGGCCTTCAGCAAGGATGGGATAATAACAGCGCTCTGGAGGGGTATGGTGCTGTCCATGAGCCTAACTACCGCAGGGTTGGTG GTTCATATAATAATAGGAGGTTTATCAATGACCGGTATTCAAGGGATAATGTCTACCCAAGAAATGCCTTCCACAGGGACATTCTAGAGAGGGAGAATTA TCCCCCTCCTGCTGTTGATGTTTGGCCCCAATCAAGAAGGAGAAGTTATGAAGAAGAATACCCCATCGAGAAGGAGTCTAGGAGACATGAGAGACAGAAC TTTGATTCTTATCATGATATGGATGCTGTTCATGATCGGGATGGCTACCATAGCATCGACAACTACCGTGATCATAAATTTGACAGGGCTTCTAGGTTTG GGGAACATGACCGTGATGATTATGCATATGATGATTATGACTATAAGTCACGTACTTCCTATCAGAAACGGGGGGATAGCCGTGAGAGGGATTATGAATA TGGTCGCCGTAGTTATGATTCTGATTATGAAAGAGGCAGCAGGAGAGATGGCAATTGGAGGAGGCATGAATCCCATGATCGAGAATGTGATAAGAGAGCT TTGAGTCAGGAAAAATCTCAGAGTCCACATAGATGGCATGAACGATCTCAGTCTCGTGGATATGATGATCGTCCTAGATCCAGGTCCCCTCGAAGTCGAA GTCATAGCCGAAGTCAACGGGAGGACAGCTATGATGATGGCAGACATGAGAGGAATGAAAGGAGGAGGGACCGTGAAGACAAGCGTCACCCTGGTCATTA TGACATGGCTCCATCCGCAACTGTTGTTGTGAAAGGTCTCTCACAGAAGACGACTGATGAAGATCTTTACCAGATACTTGCTGAGTGGGGGCCGCTTCGC CATGTTCGTGTGATCAAAGAGAGGAATTCTGGCATCTCCCGTGGATTTGCGTTTATTGATTTTCCTTCTGTGGGAGCAGCATGTGCAATGATGGATAGGA TTGGGGATGATGGTCTTGTTGTTGATGACAGAAAGCTTTTCTTTGAGTACAGCAGTAAGCCAACTGGGGGGTCAGGTGGACCTTTTGGTCAAGATAAATC TGGTCAGCACAGAAAAATCACAGTGCCATCTGATTGGATGTGCACCATTTGTGGCTGTATCAATTTTGCAAGGCGTACATCCTGCTTTCAGTGCAATGAG CCACGAGCTGATGATGCACCACCAGCAGATATAGCTTTATCAAATCCACCATCCTTAGGAAAGAAAGGATTTGAGGCAGGTCCAACTCATGTTTTGGTAG TTCGTGGATTGGATGATAATGCGGATGAGGAGATGCTTCGCTATGAATTTTCCAAACATGCTCCAATAAAGGATCTTCGACTGGTTAGAGATAAGTTTAC TCATGTTTCAAGGGGATTTGCGTTTGTACATTTCCATTCGGTTGAGGATGCTACTAAAGCCCTTGATGCGACCATTGGAACCACTCTTGAGAAGAATGGG CAGATCTTACGAGTGGCTTATGCAAAGAGCATTCTTGGCCCAGGGGCATCAGGACCGTCACAGTCAAGCAGCTTAGCAGCAGCTGCAATTGAGGCAGCGG CATTTTCCCAACAGTATGATGCTGCTGGATGGGCACCCAAGGAATATAACCCAGATGACAATCAATCTGCTGGTGGGCAGGAGCAAGCCGGTGGGGAGAT TACAGTTCAAAAGGATGGTTCTGCACCACAATCTGGTTTTGTGTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCGGGCTTCTACTTTGATGGA AATACAGGTCTTTATTATGATGGCAATCAAGGGGTTTGGTACTCTTATGACCAGCAAACTCAGCAGTACATCCCTTTCACAGATAACAATGACAATAAAG CATCTAGTAATCAGTCTGAGAATTCCAAGTCATCTGACGGTTCCAGTAACAGAAAAGTAGTAATTTCTGCTCCAGCTGCTACAATTACATCCACAGAGAA GGCTGCCTCATTACCTGATGCTGTCCAGGCTGCTGCTTCAGCAGCATTAGCTGCAGAGAAAAAAGAGAAGGAGAAAGCAAAAGAGATAAAACTTGCTTCA AAGAGCAGTATTTTGGCTAACAAGAAGAAAATGAACAATGTATTAACAATGTGGAAGCAAAGGAGTCATGAAGGACAGACTACCCGTGTGGCTCTTGATG ATAGTCATCCATCTACTCCAGCTGATGACAGGTCGTTTTCAGTTGGGCAATCCACGAAGAGCAAGTTTAAATCTGATACAACAACCACAAAGAAGAGCTC TATGTCCAGTTCAGGAGTAGTCACAGCTCCATCTGCCCAAACTAATGGTTTGGAGTCTTCAGTCAAGCCAAGACCTGTGAGCAACAGCTCAGGAGGGACT TTGATGGGGGTTATAAGGGGTTCTGGACGAGGTGTTGTGAAGTCTGATACTTCATATTCTGGACCATCTGCTGGTGTTTCTACATCCAATGCTGCTGTAC CTCTAACCATGGCAGGTTCATCAACAAATGCAGATACATCTTCTTTTGCAACTCCTTTTAGGACAGATGTATCTGCATTGGGCTCTTACACACCACCTGT GGCTGCTGGGAGTGGCAAGAGGAGATTTTCTGAAATGCCTCTACCATCTGCTGCTACTCACAAGGAGCAACCACAAAATTCCTACAGGGATCGTGCAGCT GAAAGGAGGAGCTTGTATGGTTCTTCTTCTGTTGGAGACGATTTGCCTGATGCGGATCCTCATCGGGATTCTGCATTCAAAAGGAGTACTTTGGATCCAA TGCCTTTCCCCCCTGGTGTTGGAGGAGGACGTGTGATTGGAGATGCTCAGAGTTATGAGGTGATTACAGCAGACAAGGCACTTGGTGAGAGCAATGTAGG CAATCGAATGCTTCGCAATATGGGCTGGCAAGAGGGCTCGGGGCTGGGGAAGGATGGCGGTGGAATGGTTGAACCAGTTCAAGCACAAGCCATAGATAGG AGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGATCCTAGTCTTGAGGTGCAGGCTGGGGATAGTTACAAAACACTGATTCAAAAGAAGGCTCTTGCTA GGTTCCGGGAGATGTAG
AA sequence Show only first row Show all	>Potri.017G138500.9 pacid=42814224 polypeptide=Potri.017G138500.9.p locus=Potri.017G138500 ID=Potri.017G138500.9.v4.1 annot-version=v4.1 MDPGRYGLQQGWDNNSALEGYGAVHEPNYRRVGGSYNNRRFINDRYSRDNVYPRNAFHRDILERENYPPPAVDVWPQSRRRSYEEEYPIEKESRRHERQN FDSYHDMDAVHDRDGYHSIDNYRDHKFDRASRFGEHDRDDYAYDDYDYKSRTSYQKRGDSRERDYEYGRRSYDSDYERGSRRDGNWRRHESHDRECDKRA LSQEKSQSPHRWHERSQSRGYDDRPRSRSPRSRSHSRSQREDSYDDGRHERNERRRDREDKRHPGHYDMAPSATVVVKGLSQKTTDEDLYQILAEWGPLR HVRVIKERNSGISRGFAFIDFPSVGAACAMMDRIGDDGLVVDDRKLFFEYSSKPTGGSGGPFGQDKSGQHRKITVPSDWMCTICGCINFARRTSCFQCNE PRADDAPPADIALSNPPSLGKKGFEAGPTHVLVVRGLDDNADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALDATIGTTLEKNG QILRVAYAKSILGPGASGPSQSSSLAAAAIEAAAFSQQYDAAGWAPKEYNPDDNQSAGGQEQAGGEITVQKDGSAPQSGFVWDEASGYYYDAASGFYFDG NTGLYYDGNQGVWYSYDQQTQQYIPFTDNNDNKASSNQSENSKSSDGSSNRKVVISAPAATITSTEKAASLPDAVQAAASAALAAEKKEKEKAKEIKLAS KSSILANKKKMNNVLTMWKQRSHEGQTTRVALDDSHPSTPADDRSFSVGQSTKSKFKSDTTTTKKSSMSSSGVVTAPSAQTNGLESSVKPRPVSNSSGGT LMGVIRGSGRGVVKSDTSYSGPSAGVSTSNAAVPLTMAGSSTNADTSSFATPFRTDVSALGSYTPPVAAGSGKRRFSEMPLPSAATHKEQPQNSYRDRAA ERRSLYGSSSVGDDLPDADPHRDSAFKRSTLDPMPFPPGVGGGRVIGDAQSYEVITADKALGESNVGNRMLRNMGWQEGSGLGKDGGGMVEPVQAQAIDR RAGLGSQQKKLDPSLEVQAGDSYKTLIQKKALARFREM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138500 [exp]	0	1
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	3.31	0.8683
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	3.87	0.8538
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	4.58	0.8371
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.014G000700 [exp]	6.92	0.7880
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.002G257400 [exp]	8.12	0.8384
					Potri.006G225133 [exp]	8.71	0.8556
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	14.00	0.7491
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	14.07	0.7596	UBP26.2
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	14.24	0.6933
					Potri.003G065701 [exp]	18.54	0.8165

Compare expression of checked genes

Potri.017G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.