Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27190 712 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 659 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 588 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 445 / 1e-149 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G13380 253 / 1e-72 BRL3 BRI1-like 3 (.1) AT5G07280 252 / 3e-72 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 245 / 8e-70 BRL1 BRI1 like (.1.2) AT4G39400 229 / 2e-64 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G60800 220 / 2e-63 NIK3 NSP-interacting kinase 3 (.1) AT2G01950 226 / 3e-63 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081700 [exp] 927 / 0 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 695 / 0 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 695 / 0 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G240000 [exp] 457 / 2e-154 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 441 / 9e-148 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 435 / 1e-145 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 425 / 8e-142 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.015G141200 [exp] 256 / 1e-73 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G144700 [exp] 251 / 3e-72 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 734 / 0 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013288 [exp] 423 / 6e-146 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10008743 [exp] 315 / 2e-99 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 315 / 9e-99 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10038875 [exp] 244 / 2e-69 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 243 / 9e-69 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006817 [exp] 241 / 2e-68 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 240 / 6e-68 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10007292 [exp] 229 / 4e-67 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 227 / 2e-66 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G138600.1 pacid=42814470 polypeptide=Potri.017G138600.1.p locus=Potri.017G138600 ID=Potri.017G138600.1.v4.1 annot-version=v4.1 ATGAAGAAGAATACCCTCATTTCCCTCTCTCTACTACTCTCCCTCTTCGCCTTATCTTTCTCCATAGAAGATGATATCACCTGTCTTGAAGGGGTCAAGA AGTCCTTTACTGACCCACTGGGTCGACTCACTTCCTGGACTTTCAACAACAACTCAGTTGCTTTCGTTTGTAAACTCAATGGTGTTTCTTGCTGGAACGA GAAGGAGAACCGAATCATCAGTCTTCAGCTATCGTCTTTTCAGCTTTCAGGCAAGTTACCGGAGTCTCTCAAGTACTGTCATAGCTTAACAACACTGGAT CTTTCAAGCAATGATCTTTCAGGGCCGATCCCACCTGAGATTTGTAACTGGTTGCCTTATATAGTCTCTCTTGATCTCTCCGGGAACAAGTTTTCCGGTC CGATCCCGCCGGAGATTGTGAATTGTAAGTTCTTGAATAATTTGATTTTGAGTGGAAATCAGTTGACTGGTTCGATTCCTTTTGGTCTTGGTCGCCTTGA TCGGTTGAAAACGTTTTCAGTGGCTTCCAATGAACTGTCTGGTTCGATACCGGATGAATTGTGGGCTTTTTCGAAGGATTCTTTTGATGGGAATGATGGG TTGTGCGGTAAGCCGCTAGGGAAGTGTGGTGGGTTGAGTAGTAAGAGTCTTGGCATTATCATTGTTGCTGGGGTTGTCGGGGCTGGTGGGTCATTGATTT TGGGGTTTGTAATTTGGTGGTGGCTGTTTGTTAGGGGAGGTAAGAAAAAGAGAGGTTCTGGTGGCGGCGGCGGTAAGGGTGATGATCCTAGTTGGATTGA GTTGCTTAGGTCACATAAGCTAGTACAAGTGACGTTGTTTCAAAAACCTATTGTTAAGATCAAGCTGGCTGATATTTTGGCTGCAACTAATAGTTTTGAT TTTGAGAATATTGTGATTTCAACGAGAACTGGGGATTCGTATAAGGCGGATTTGCCTGATGGATCTAGTCTCGCTATTAAGAGGCTTAATGCTTGCAAAC TTGGTGAGAAGCAATTTAGGGGTGAGATGAATAGGTTAGGGGAGCTTAGGCATCCGAATTTGGTGCCATTGTTAGGTTATTGTGCTGTTGAAGTGGAAAA GCTCTTGGTGTATAAGCATATGCCTAATGGGACTTTGTATTCTCAATTGCATGGAAGTGGATTTGGTATTAGTCAGTCTAGTGTTTTGGATTGGCCTACG AGGGTGAGGGTTGGTGTTGGCGCAACAAGAGGACTTGCTTGGCTTCACCATGGGTGCGATCCACCTTATATTCACCAGTATATTAGTTCCAACGTGATAC TTCTTGATGATGATTTTGATGCAAGGATTACTGATTTTGGGTTGGCAAGGTTGATTAGTTCTCCTGATTCTAATGATAGTTCTTATGTTAATGGAGATCT TGGGGAGTTTGGGTATATTGCTCCTGAGTATTCCAGCACAATGGTTGCCTCATTGAAAGGTGATGTTTATGGCTTTGGTGTTGTGCTTTTGGAGTTGGTA ACTGGACAGAAAGCTTTAGATGTCAATAATGAAGAGGAAGGATTCAAAGGGAATTTGGTGGATTGGGTTAATCAATTGGTGAGCACTGGTCGAAGCAAGG ATGCCATTGATAAAGCTCTAACTGGGAAAGGTCATGATGATGAGATTATGCAGTTCTTGAGGGTTGCTTGGAGCTGTGTTGTTTCCAGGCCCAAGGACAG GCCTTCAATGTACCAAGTCTATGAGTCTCTGAAGGGTTTGGCTGAGAAACATGGTTTCTCTGATCAATACGATGAATTCCCACTGATCTTTGGCAAACCA GATCCTGATTACAAGGAGTAG
AA sequence Show only first row Show all	>Potri.017G138600.1 pacid=42814470 polypeptide=Potri.017G138600.1.p locus=Potri.017G138600 ID=Potri.017G138600.1.v4.1 annot-version=v4.1 MKKNTLISLSLLLSLFALSFSIEDDITCLEGVKKSFTDPLGRLTSWTFNNNSVAFVCKLNGVSCWNEKENRIISLQLSSFQLSGKLPESLKYCHSLTTLD LSSNDLSGPIPPEICNWLPYIVSLDLSGNKFSGPIPPEIVNCKFLNNLILSGNQLTGSIPFGLGRLDRLKTFSVASNELSGSIPDELWAFSKDSFDGNDG LCGKPLGKCGGLSSKSLGIIIVAGVVGAGGSLILGFVIWWWLFVRGGKKKRGSGGGGGKGDDPSWIELLRSHKLVQVTLFQKPIVKIKLADILAATNSFD FENIVISTRTGDSYKADLPDGSSLAIKRLNACKLGEKQFRGEMNRLGELRHPNLVPLLGYCAVEVEKLLVYKHMPNGTLYSQLHGSGFGISQSSVLDWPT RVRVGVGATRGLAWLHHGCDPPYIHQYISSNVILLDDDFDARITDFGLARLISSPDSNDSSYVNGDLGEFGYIAPEYSSTMVASLKGDVYGFGVVLLELV TGQKALDVNNEEEGFKGNLVDWVNQLVSTGRSKDAIDKALTGKGHDDEIMQFLRVAWSCVVSRPKDRPSMYQVYESLKGLAEKHGFSDQYDEFPLIFGKP DPDYKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27190			Leucine-rich repeat protein ki...		Potri.017G138600 [exp]	0	1
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.005G090300 [exp]	7.93	0.7711
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	19.74	0.7013
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	36.75	0.7009
					Potri.017G119700 [exp]	59.16	0.6728
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	83.78	0.6605
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.006G158538 [exp]	94.04	0.6610
AT3G23490		CYN	cyanase (.1)		Potri.010G068200 [exp]	96.03	0.6616	Pt-CYN.1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057500 [exp]	102.99	0.6434	CCR.8
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Potri.015G105200 [exp]	106.98	0.6477
AT3G11730		ATFP8, AtRABD1	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.004G226600 [exp]	134.07	0.6229

Compare expression of checked genes

Potri.017G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.