Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74520 119 / 4e-32 ATHVA22A HVA22 homologue A (.1) AT1G69700 95 / 5e-23 ATHVA22C HVA22 homologue C (.1) AT5G62490 79 / 2e-17 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT5G50720 70 / 1e-14 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT2G42820 69 / 7e-14 HVA22F HVA22-like protein F (.1) AT4G24960 62 / 1e-11 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT2G19380 54 / 9e-08 RNA recognition motif (RRM)-containing protein (.1) AT4G36720 47 / 7e-06 HVA22K HVA22-like protein K (.1) AT5G61190 43 / 0.0004 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078500 [exp] 426 / 2e-147 AT1G74520 104 / 6e-26 HVA22 homologue A (.1) Potri.001G283000 [exp] 385 / 3e-130 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.012G069300 [exp] 106 / 3e-27 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.015G062800 [exp] 103 / 3e-26 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.005G152100 [exp] 77 / 2e-15 AT1G69700 102 / 1e-25 HVA22 homologue C (.1) Potri.001G006000 [exp] 70 / 3e-14 AT2G42820 235 / 1e-80 HVA22-like protein F (.1) Potri.012G101600 [exp] 66 / 4e-13 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G099700 [exp] 66 / 5e-13 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.014G148600 [exp] 61 / 2e-11 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023605 [exp] 113 / 2e-29 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10024234 [exp] 113 / 2e-29 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10042193 [exp] 113 / 3e-27 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10037191 [exp] 103 / 4e-26 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10008623 [exp] 96 / 3e-23 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10031386 [exp] 77 / 2e-16 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10010944 [exp] 74 / 1e-15 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10032557 [exp] 67 / 1e-13 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10043186 [exp] 66 / 6e-13 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [poplar] [flax] TB2_DP1_HVA22 TB2/DP1, HVA22 family CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type
Representative CDS sequence Show only first row Show all	>Potri.017G139000.3 pacid=42813747 polypeptide=Potri.017G139002.1.p locus=Potri.017G139000 ID=Potri.017G139000.3.v4.1 annot-version=v4.1 ATGATGGGTTTCGTGTTTCTTTTAAGATTTGCAGTGAAATGCCTCGGTGTTCTTGCATGGCCTGTTTTTGGTTTGGGTTATCCTCTATGTGCTTCCATTC AAGCGATCGAGACTAATTCGAACTCAGACACCCAGAAGCTGATCTCATACTGGGTCTCCATTTCTGTGGTCTTGCTCCTTGAACATTCGTTTCAGCTTGA ATGGCTAGCCTTCTGGCTATACATTAAGCTAATGATCGTCGGCTACTTGGTTCTGCCTTACTTCGATGGTTCTCTGTATGTCTATAAACACCTTATTAAT CCGTGTCTATCCATGAGCCCTGCAATTATCACCTGCCAGTTCAACAAGCAGGAGGAGTTGTTTTTCAAGAAAGATGATTTTCTTGTTGAGATGAGGAGGT ATATGAAGGAAAAGGGCTCTGATGCTTTGGAGGATCTCATTGCTTCCACGAAAAAGAGTGCAAAGCCTGATGTTGATGTGAAGGAGATCAGGGCGGTTGA AGCAGAGGATTTGCTGAAGTTCGAACAACTTCCGGTTCGATTCGAAGACAGTAATGATGTGGAGACAACAGAGAAGATAGAAGTTGCATCAACCAAGCAG GCTAGACAGGCAGAATCCAACGTCAACCAGACAGAAAACAGAACATTTCCACCTCTGGAATGCATAAACACTGCAACAACAACAGTAGGAGGCGGAGATC TTTGTGGGATTCTACCTCCCGAGAAAGTCCAAAAGGTATGGACTTGTGTTATATGTCAAGTAACAGCCCAAAGTGAGACAGCTCTAATTTCACATCTCCA TGGGAAGAGACACAAGGCCACTTGTGAACAGCTAAATGTCAAGAATCAGAAAGCTTGTGAGCCTCTGAACTTCAAGAACCAGAAAGCTTGTGAGCCTCTG AACTTCAAGAACCAGGCATCAAACAGCAATGTTTCCCCTGCTTCAGTAGGAAGGAACCTGATGAAGAGCAGATGTATTGAGATGATAGGTTCTCATTGGT TTTGTACAATCTGCAATGTAAGCAGTGTACATGGCATGCAAAGTCACCTTAAAGGGAAAAGGCACAGGGCTTCGTTGCAAGCATTGGATGGTCTTGGAGG TAATAGGCATGCTTGA
AA sequence Show only first row Show all	>Potri.017G139000.3 pacid=42813747 polypeptide=Potri.017G139002.1.p locus=Potri.017G139000 ID=Potri.017G139000.3.v4.1 annot-version=v4.1 MMGFVFLLRFAVKCLGVLAWPVFGLGYPLCASIQAIETNSNSDTQKLISYWVSISVVLLLEHSFQLEWLAFWLYIKLMIVGYLVLPYFDGSLYVYKHLIN PCLSMSPAIITCQFNKQEELFFKKDDFLVEMRRYMKEKGSDALEDLIASTKKSAKPDVDVKEIRAVEAEDLLKFEQLPVRFEDSNDVETTEKIEVASTKQ ARQAESNVNQTENRTFPPLECINTATTTVGGGDLCGILPPEKVQKVWTCVICQVTAQSETALISHLHGKRHKATCEQLNVKNQKACEPLNFKNQKACEPL NFKNQASNSNVSPASVGRNLMKSRCIEMIGSHWFCTICNVSSVHGMQSHLKGKRHRASLQALDGLGGNRHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	0	1
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	2.00	0.8194
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	3.16	0.8214
AT5G07610			F-box family protein (.1)		Potri.004G232700 [exp]	5.09	0.7256
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	5.47	0.7504
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	6.32	0.7967
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	9.53	0.7777
AT1G34010			unknown protein		Potri.003G177200 [exp]	9.94	0.7672
AT5G41590			Protein of unknown function (D...		Potri.001G098400 [exp]	11.13	0.6710
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	13.03	0.7125
AT4G38980			unknown protein		Potri.009G124000 [exp]	13.56	0.7265

Compare expression of checked genes

Potri.017G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.