Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12740 436 / 6e-154 ALIS1 ALA-interacting subunit 1 (.1) AT1G79450 436 / 9e-154 ALIS5 ALA-interacting subunit 5 (.1.2) AT1G54320 436 / 9e-154 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT1G16360 429 / 2e-151 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT5G46150 364 / 2e-125 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081100 [exp] 596 / 0 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.008G082100 [exp] 440 / 3e-155 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.010G173900 [exp] 420 / 2e-147 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.001G381500 [exp] 412 / 3e-144 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.011G082100 [exp] 370 / 5e-128 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001762 [exp] 483 / 5e-172 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10033283 [exp] 457 / 6e-162 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10034744 [exp] 454 / 2e-160 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10001834 [exp] 429 / 3e-151 AT1G54320 471 / 1e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10038516 [exp] 404 / 3e-141 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10023290 [exp] 404 / 5e-141 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [poplar] [flax] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Potri.017G139300.1 pacid=42814074 polypeptide=Potri.017G139300.1.p locus=Potri.017G139300 ID=Potri.017G139300.1.v4.1 annot-version=v4.1 ATGATAGGGGAAGCCACAAGCTCTAGCGGTGGAGGCAAGGATGATTCTCCTGCTGCTGTTTCTGCCAAAAAGAACAAGAAACCCAACTATTCTAGATTCA CACAGCAAGAGCTTCCTGCTTGTAAACCTATTTTAACGCCGGGATGGGTCATTACATCATTCATTGTTGTTGGAGTTGTGTTTATCCCTATAGGCCTTGC TTCCTTGTATGCATCAGAACATGTGGTGGAAATTGTGGAGCGATATGACAAAGATTGTATTCCCCCTGATTATAGAAATAACAGCCTACATTATATCCAA ACCAGCGAAATTAACAAGACTTGTACAATGACCATTAATGTTCCAAAGCACATGAAAAGTCCTGTTTTCATCTATTACGAGCTTGATAACTTTTACCAGA ACCACCGTCGATATGTAAAAAGTCGAAGTGATAAACAGTTACGAAGCAAGGCCAGTGAAGGTGTCACAGAAACCTGCAAACCGGAAGCTGTCACATCAAA TGGGCAACCAATTGTTCCTTGTGGCCTTGTTGCATGGAGTTTGTTCAATGATACATACAGGTTTTCGGTAAAAAAAGAGGTTTTAGATGTCAGCAAAAAG AATATTGCTTGGAAAAGTGACCAGGAGCATAAATTTGGTTCCGATGTCTATCCTAAAAATTTCCAGAGTGGAAGCTTGATTGGAGGTGGAAAACTTGATT CAAGCATACCTTTGAGTGAACAAGTAGATCTTATTGTATGGATGCGTACTGCAGCGCTGCCAAACTTCAGAAAACTTTATGGAAAGATAGAGAAGGACCT TCAAGCTAACACTACAATTACGGTTACCATTGAGAATAATTATAACACTTACAGTTTTGGAGGCAAAAAGAAGCTGGTTCTTTCAACCACGAGTTGGATA GGTGGAAAAAATAGTTTCCTGGGCAGAGCTTATATCGCTATTGGAGGCTTGTGCTTGTTCTTGGCAGTATGCTTTGTATTTGTATATGTGTTCAAGCCAA GGCCCCTTGGTGATCCATCCTACTTATCTTGGAACAGGAATCCATCAGGACAAATGAATTAA
AA sequence Show only first row Show all	>Potri.017G139300.1 pacid=42814074 polypeptide=Potri.017G139300.1.p locus=Potri.017G139300 ID=Potri.017G139300.1.v4.1 annot-version=v4.1 MIGEATSSSGGGKDDSPAAVSAKKNKKPNYSRFTQQELPACKPILTPGWVITSFIVVGVVFIPIGLASLYASEHVVEIVERYDKDCIPPDYRNNSLHYIQ TSEINKTCTMTINVPKHMKSPVFIYYELDNFYQNHRRYVKSRSDKQLRSKASEGVTETCKPEAVTSNGQPIVPCGLVAWSLFNDTYRFSVKKEVLDVSKK NIAWKSDQEHKFGSDVYPKNFQSGSLIGGGKLDSSIPLSEQVDLIVWMRTAALPNFRKLYGKIEKDLQANTTITVTIENNYNTYSFGGKKKLVLSTTSWI GGKNSFLGRAYIAIGGLCLFLAVCFVFVYVFKPRPLGDPSYLSWNRNPSGQMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	0	1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	5.09	0.9327
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	7.21	0.9083
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	9.32	0.9207
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	9.48	0.8767	Pt-TOM3.1
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	10.09	0.9135
AT1G33490			unknown protein		Potri.013G095200 [exp]	10.58	0.9113
AT2G41610			unknown protein		Potri.014G108300 [exp]	11.31	0.9188
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	11.40	0.9234
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	12.44	0.9173
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	14.14	0.8957

Compare expression of checked genes

Potri.017G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.