Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65920 937 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 651 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 627 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 539 / 8e-174 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 537 / 3e-173 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 520 / 1e-166 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 512 / 3e-164 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 507 / 1e-161 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 457 / 2e-144 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 181 / 3e-49 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080900 [exp] 1711 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 708 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 678 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 668 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 644 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 625 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 551 / 1e-178 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 545 / 7e-176 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 515 / 1e-164 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036030 [exp] 743 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036737 [exp] 599 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 597 / 0 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10009701 [exp] 557 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 542 / 3e-175 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10024157 [exp] 543 / 6e-175 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10029772 [exp] 540 / 5e-174 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10039525 [exp] 535 / 5e-173 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10028600 [exp] 528 / 1e-169 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 531 / 4e-169 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3
Representative CDS sequence Show only first row Show all	>Potri.017G139600.1 pacid=42814173 polypeptide=Potri.017G139600.1.p locus=Potri.017G139600 ID=Potri.017G139600.1.v4.1 annot-version=v4.1 ATGGGGGAAGAATCCTTAACTACTGTCCCTTTTGACAGAACTGTTGAGCAGGCAATCCTGGCTATGAAGAAGGGTGCACATCTCCTGAAGTGTGGAAGAA GAGGGAAGCTCAAATTCTGTCCGTTCAGGCTTTCCACGGACGAGAAGTATTTGATTTGGTATTCTGGACAGGAGGAGAAACAATTGAGATTAAGCTTAGT TGTAAAGATTGTTACTGGGCAGAGGACTAGGCAGCTTCAACCAGATAAGGAGAATCAATCATTTTCACTTATCTATACAAATGGTGATCGCGCACGCTCG CTTGATCTGATATGTAAGGACAAAGCGCAGGCTGATTCTTGGTTTATAGGCTTAAGGGCAGTGATATCCAGGTGTCACCGTTCTAGGCCTATTTGTGTCC TGAAGAACCACAGAGGAGCACAAAGTTGTGTAAATAGCCCAGCTGGGTTTATCAGAAGAAAGCACAATCTAGGAATTCTGGAGGATGACACTGAATTGTC ACAGGTGCGTAGCTTAAGCGGAAGTCCTACGCAGTCACTTTCAGATAGGGGTATTTCCGATGGATTGTCTCTTTCTTCTGATAGCCTTTTTTTCTCAGGA TCAAGTCTTCCCCAGATGCAAAATGTGGAGGATTTGTTAGTTTCGTACATACCAAATGTTGAACCACAAAATCTCAAGAAGAATGGATCTGACACTGCTT ACTCAGAGTTCCAAAAGAATACATGTCATAGAGTTATTGGTTTGAATCATGGATCTCCACGAACAGAGAAAAAAGACATCCTAAAGGATGTTCTAATCTG GGGAGAAGGAGTAGAAGTAGGAAATATAGGGTGTGTGGACAACCAGTTTGGTTACCACAATACAAAGCAAGTGGATGCTTTATTGCCAAAATTGTTGGAA TCTACCGTGATGTTAGACGTAACAAATATATCTTTAGGAAGGAAACATGCTGCCTTAATCACCAAACGAGGGGAAGTTTTCTGCTGGGGTGAAGGAAGTC GCGGGAAGCTTGGGCATAAAGTTGACATGGATGTGAGCTCTCCAAAAATGGTTGAATCCTTAGATGGTGTCCATGTGAAATCTGTTGCTTGTGGTGAATA TCAAACTTGTGCTTTGACAGATTCTGGTGAACTGTATGCATGGGGTGAGAATAAATATGGTGCAAATTTGGGGTGCGAGGAGAGAAGTAGAAGCCAGTGG TTACCACGTCGAATTTCAGGTCCTTTGACTGGTGTCTGTATACTGAATGTTGCTTGTGGGGACTGGCATACAGCGATTGTGTCCTCATCAGGGCAGTTAT TTACATATGGGGATGGATCTTTTGGGGTTCTTGGTCATGGGAATCTTCTAAGTGTTTCTCAACCCAAAGAAGTTGAATCTCTTAAAGGTTTGTTGGTAAA ATCCGTTGCATGTGGATCATGGCACACTGCTGCTATTGTGGACATCATTGTTGACCGGTTCAAGTTTAATGGTGTTGGTGGGAAATTATTTACGTGGGGA GATGGTGATAAAGGGAGGCTGGGGCATGCTGACCTGGAGAAAAAGCTTCTACCAACATGTGTCGCACAGCTTGTGGAACTTGATTTTGATCAAGTTTCTT GTGGAAGAATGCTGACCGTTGCACTTACCAATACAGGGAAGGTCTATACAATGGGAAGCTCAGTGCATGGACAGTTGGGGAATCCACACGCCAAGGATAA ATCGATTGTAATTGTTGAAGGAAAGCTTAAAGAGGAGTTTGTTAAGGAGATATCGTCAGGGTCATACCATGTTGCTGCATTGACATCGAGTGGAAGTTTA TATACATGGGGGAAGGGGACAAATGGACAATTAGGATTAGGCAATGTAGAAGATAGAAACTTTCCAACTTTGGTTGAGGCCCTGAGAGATATGCAGGTTC AAAGCATAGCTTGTGGGTCAAATTTAACTGCTGCAATCTGCTTGCACAAATCTATCTCTGTTAGTGATCAATCAGCTTGTAAGGGCTGTAGAATGCCCTT TGGTTTCACAAGGAAGAAGCATAACTGTTATAATTGTGGTCTTCTGTTCTGCCGAGCATGTAGTAGCAAGAAGGTCATGAATGCATCTTTGGCACCTAAC AAAAGCAAGCCTTCTAGAGTCTGTGATTCATGTTTTTACAGTATGCAGAATATCACACATCCAGGTGGAGTGTCAAAACTAGAAAATCTTGGTTCCAAGA AGCTGCTGTCCCAACAGAAGAAGGCCTTATCAGATGAAAAGGAAGAAAGGGGCAGAGCAACCCCTCCAGGGCATCGTTTACAGTTAATGAGCCAGCCATC TCTGGAAATCCGACCTGGTGAAAGGAAGACCCCGAGAAACCAAGGGGAAAAGCAGCAACATTTAGAAACTGCCTTTTCTATTTCAGCTGGATTGCCACAA TGGGGACAAGTGTCATGTCCTGCTATATTTGAATCATGCTACATAAAGAATTCTGAACTTCCTCTGGAATCAAAATCTTCCATTTCCAGTTCCTTGAATC TAGAAGAAGAATTGAGTGATTCAAAAAAGATGCTAATTGAAGAAGTTAAGAGGCTAAGAGCACAGGCTAGGAGCCTCGAGATGCAATGTCAAACTGGAAG CCAGAAGATTGAAGAATGTCAACTAACTATAGAGAAAACTTGGTTCCTGGCCAGGGAGGAAGCAGCTAAGCGTAAAGCAGCAAATGAGATAATAAAAGCT TTGGCATTAAGGCTTCATGCAATGTCAGATAAAGTCTCAGTTAGGAAAGAAGCAAAAGATGGAGTGGATTCGTATCAGCCTCAGACTAGACCTGACTATA CTGATACCCCTACACTTTCTGGTGGATGTGCTGTGTTTCCATCAACTCATTTGCCTCTCGAAGTTAGATTTCCAAAAGACAGCAAGATAGACAGCTTATC TAACTCTCCTATTGTGTTTTCCAATACGTTAAAGTCCATGGATGGAAGAGAGTTGTGCCATGAAGATAGCAGACCAGAGGAAGATTTACATGACACGACG ACTGATCCTCGACGAAATGGAACTAAAGCGTCGAAGCATGAATGGGTCGAACAATATGAACCTGGTGTATATATAACATTTACAATTTTGCCGAGTGGAC TGAAGGGTCTGAAGCGAGTCAGGTTTAGCCGTAAACGTTTCGCAGAGAAAGAAGCAGAGCGATGGTGGGAGGAGAATCAAGCTATTGTATACCAGAAATA CGGCATTGAAGGATACAATAAATCAAACCAAAATCTGACAAAGAGCTAA
AA sequence Show only first row Show all	>Potri.017G139600.1 pacid=42814173 polypeptide=Potri.017G139600.1.p locus=Potri.017G139600 ID=Potri.017G139600.1.v4.1 annot-version=v4.1 MGEESLTTVPFDRTVEQAILAMKKGAHLLKCGRRGKLKFCPFRLSTDEKYLIWYSGQEEKQLRLSLVVKIVTGQRTRQLQPDKENQSFSLIYTNGDRARS LDLICKDKAQADSWFIGLRAVISRCHRSRPICVLKNHRGAQSCVNSPAGFIRRKHNLGILEDDTELSQVRSLSGSPTQSLSDRGISDGLSLSSDSLFFSG SSLPQMQNVEDLLVSYIPNVEPQNLKKNGSDTAYSEFQKNTCHRVIGLNHGSPRTEKKDILKDVLIWGEGVEVGNIGCVDNQFGYHNTKQVDALLPKLLE STVMLDVTNISLGRKHAALITKRGEVFCWGEGSRGKLGHKVDMDVSSPKMVESLDGVHVKSVACGEYQTCALTDSGELYAWGENKYGANLGCEERSRSQW LPRRISGPLTGVCILNVACGDWHTAIVSSSGQLFTYGDGSFGVLGHGNLLSVSQPKEVESLKGLLVKSVACGSWHTAAIVDIIVDRFKFNGVGGKLFTWG DGDKGRLGHADLEKKLLPTCVAQLVELDFDQVSCGRMLTVALTNTGKVYTMGSSVHGQLGNPHAKDKSIVIVEGKLKEEFVKEISSGSYHVAALTSSGSL YTWGKGTNGQLGLGNVEDRNFPTLVEALRDMQVQSIACGSNLTAAICLHKSISVSDQSACKGCRMPFGFTRKKHNCYNCGLLFCRACSSKKVMNASLAPN KSKPSRVCDSCFYSMQNITHPGGVSKLENLGSKKLLSQQKKALSDEKEERGRATPPGHRLQLMSQPSLEIRPGERKTPRNQGEKQQHLETAFSISAGLPQ WGQVSCPAIFESCYIKNSELPLESKSSISSSLNLEEELSDSKKMLIEEVKRLRAQARSLEMQCQTGSQKIEECQLTIEKTWFLAREEAAKRKAANEIIKA LALRLHAMSDKVSVRKEAKDGVDSYQPQTRPDYTDTPTLSGGCAVFPSTHLPLEVRFPKDSKIDSLSNSPIVFSNTLKSMDGRELCHEDSRPEEDLHDTT TDPRRNGTKASKHEWVEQYEPGVYITFTILPSGLKGLKRVRFSRKRFAEKEAERWWEENQAIVYQKYGIEGYNKSNQNLTKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	0	1
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.006G216300 [exp]	2.44	0.8294
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	3.16	0.8244
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G058600 [exp]	6.63	0.8092
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	8.48	0.7694
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	9.00	0.8233
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Potri.001G359000 [exp]	9.16	0.7690	IAMT1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	16.43	0.8068
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	23.68	0.7668
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.003G144900 [exp]	24.67	0.7536
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	24.97	0.7937

Compare expression of checked genes

Potri.017G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.