Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17290 406 / 2e-142 ATG5, APG5, ATATG5 AUTOPHAGY 5, autophagy protein Apg5 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029817 [exp] 465 / 3e-165 AT5G17290 462 / 4e-164 AUTOPHAGY 5, autophagy protein Apg5 family (.1) Lus10020737 [exp] 463 / 2e-164 AT5G17290 466 / 8e-166 AUTOPHAGY 5, autophagy protein Apg5 family (.1) Lus10017221 [exp] 0 / 1 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF04106 [poplar] [flax] APG5 Autophagy protein Apg5
Representative CDS sequence Show only first row Show all	>Potri.017G139700.1 pacid=42814569 polypeptide=Potri.017G139700.1.p locus=Potri.017G139700 ID=Potri.017G139700.1.v4.1 annot-version=v4.1 ATGATGGAGGCACAGAAATACGTATGGGAAGGAGCAATTCCATTACAAATTCATCTCCATGAATCAGAAATAACAAGCCTCCCACCACCATCTCCAGCAT TAATCTTAGCACCTAGAATTGGTTACTTACCTCTGCTTCTTCCTCTTATTAAGCCTTACTTCTCTTCTACTCTCCCTCCTGGACAAGATACTATTTGGTT TGATTACAAAGGATTGCCTCTAAAATGGTATATACCAACTGGGGTGCTTTTTGATCTTCTATGTGCACAACCTGAAAGGCCTTGGAATTTGACGGTACAT TTTAGAGGTTATCCTAGTAATTTGTTGATTCCTTGCGAAGGTGAAGAGTCTGTAAAGTGGAGCTTTATTAATTCACTGAAAGAGGCAGATTACATTATCA ATGGAAATTGCAAGAATGTTATGCACATGTCTCAATCTGATCAAGTGGAGCTGTGGCATTCTGTCATGGATGGTAATTTGGAGAAATATATACGTGCATC TTCAAAGCTTAAACTTGGAACAGTCACCACTGATGAGGCAGATATGGTTGGGCAAGTGAAGGCAGGTAAAATTCCAGTTAGATTGTATGTTTGGAGTGTT AATGAGGATTTTGAAGATCTGGAAGATGCACCAGAAGTTGATAACTGGGATCAAATTTCTTATATAAATCGTCCTCTTGAAATTCACAAACAAGGAAAAC ATTTCACCCTTCACGATGCACTGAAAAATCTCCTGCCAGAATTTTTTGGGGGCAAATCCTTGATCAATGATGAACCATGCATAGAAGAAGGTGAAGATGT ACAGAAGGTTTCATCAGAAGATGCAGGCAGCAGTACAGGAGCTGAAGAGGGGAAAGAAATCTTTAACCAACCCGTGGAGTCTTGCTGCAACGATGCTGAA ATTAAACTCGTCCGCATCCAAGGGATTGAACCAAAGATGGAAATACCTTTCTCTTGGGTGGTGAACAGCCTAAAGAATCCTGAGCACTTTCTTCATATCT GTGTTTGTGTCAAAGTTCCAAATGTAAATGCTGCATGA
AA sequence Show only first row Show all	>Potri.017G139700.1 pacid=42814569 polypeptide=Potri.017G139700.1.p locus=Potri.017G139700 ID=Potri.017G139700.1.v4.1 annot-version=v4.1 MMEAQKYVWEGAIPLQIHLHESEITSLPPPSPALILAPRIGYLPLLLPLIKPYFSSTLPPGQDTIWFDYKGLPLKWYIPTGVLFDLLCAQPERPWNLTVH FRGYPSNLLIPCEGEESVKWSFINSLKEADYIINGNCKNVMHMSQSDQVELWHSVMDGNLEKYIRASSKLKLGTVTTDEADMVGQVKAGKIPVRLYVWSV NEDFEDLEDAPEVDNWDQISYINRPLEIHKQGKHFTLHDALKNLLPEFFGGKSLINDEPCIEEGEDVQKVSSEDAGSSTGAEEGKEIFNQPVESCCNDAE IKLVRIQGIEPKMEIPFSWVVNSLKNPEHFLHICVCVKVPNVNAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	0	1
AT5G50230			Transducin/WD40 repeat-like su...		Potri.015G087200 [exp]	2.23	0.8133
AT1G65020			unknown protein		Potri.013G079101 [exp]	3.87	0.7906
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	3.87	0.7549
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	5.47	0.7092
AT5G11440		CID5, IPD1	INCREASED POLYPLOIDY LEVEL IN ...		Potri.006G246600 [exp]	6.32	0.7990
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.012G127300 [exp]	6.78	0.6917
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	7.87	0.6783
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	8.12	0.7273
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.009G062600 [exp]	11.95	0.7154
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	17.86	0.6805

Compare expression of checked genes

Potri.017G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.