Plant FIBer expression Database

Potri.017G139800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03210 432 / 1e-151 unknown protein
AT1G60790 45 / 7e-05 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G080600
[exp]
623 / 0 AT3G03210 438 / 4e-154 unknown protein
Potri.010G043300
[exp]
44 / 0.0002 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031359
[exp]
464 / 2e-164 AT3G03210 410 / 2e-143 unknown protein
Lus10020802
[exp]
457 / 9e-162 AT3G03210 436 / 1e-153 unknown protein
Lus10007384
[exp]
452 / 1e-159 AT3G03210 432 / 4e-152 unknown protein
Lus10010965
[exp]
447 / 7e-158 AT3G03210 404 / 4e-141 unknown protein
Lus10002776
[exp]
56 / 5e-09 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0264 SGNH_hydrolase PF13839 PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Representative CDS sequence
>Potri.017G139800.1 pacid=42813831 polypeptide=Potri.017G139800.1.p locus=Potri.017G139800 ID=Potri.017G139800.1.v4.1 annot-version=v4.1
ATGCTAATTATGTTAGGTGGTGTACAAATTGGAGTATTGGCAGCTTGTGTGGTGTTATTTGTGCCAATGGGAATGGCAGGTTATCATTTAAGCCGAAACA
GGATGTTGTTTTTCAGTGGTGCCCTTTTCATTACACTTGCGGTAGGTGTTCATTTGACTCCTTATTTCCCTTCTGTTTCTGATTTTGTTAGTTCAGTTAA
ATCTGTTGTTGTTTATGATAATCGTGAGGATTCTTGTATTAATTTAGTTAATGAAGTTGTTTGGGATGTTAAACCTCGTATTATTAGTAGTAGTGGTGAT
GGTACTGTTGATTATGACAAGATATGGGATTGGTCTAAAAATGGGAAGGTGAAAGGTTGTGATTTTGAGAAGTTGGGGAGGGGAGATGTTAAGGATTTGC
TTAATGGGTCATGGGTTGTTGTGGCAGGGGATTCGCAAGCGCGGTTGACTGTGCAATCTTTGTTAAGTTTGATTTTAGATGAGAAAAGGATGGGAATGAT
TAAGGGGGATTTGTATAAGAAGCATAGTGATTATGAGATTGTTGTGGATGAGATTGGTATGAAATTGGATTTTGTTTGGGCTCCGTATGTTGTTAATTTA
ACGAGTTTGATGATGGGGTTTAAGCAGAATAGAACTTACCCTGATGTTTTGGTGATGGGAGCAGGGTTGTGGCATATGCTTCATGTGAACAACGCATCGG
ATTATGATGTTGCATTGGAGAATTTGAGGAGTTCAGTGGTTTCCTTGTTACCGTTTTCACCAGAATTGGATACGGATGGGCCTGTGACGGGTTCTGTGTC
TGTTAGATCTCCTCATCTGTTTTGGCTTGGGATGCCAATTTTGATAAATGGGATGTTGAATACAGAGGAGAAGAGGGAGAAGATGAATGATGAAATGTGT
CGTGCTTATGATAGTGCACTGCATAATAGTAGGCTCTTGCGCAGATATGGTGGTCCTCTTCTGTTGTTGGATATTCAATCGTTGAGTTGGAATTGTGGAC
CGCGGTGTACAATTGATGGGATGCATTATGATGGAACTGTTTATGAAGCTGCTGTTCATATTCTGTTAAATGCATTGCTTATTGAATCTCATCAGAAGCT
TGGATCTTCATAG
AA sequence
>Potri.017G139800.1 pacid=42813831 polypeptide=Potri.017G139800.1.p locus=Potri.017G139800 ID=Potri.017G139800.1.v4.1 annot-version=v4.1
MLIMLGGVQIGVLAACVVLFVPMGMAGYHLSRNRMLFFSGALFITLAVGVHLTPYFPSVSDFVSSVKSVVVYDNREDSCINLVNEVVWDVKPRIISSSGD
GTVDYDKIWDWSKNGKVKGCDFEKLGRGDVKDLLNGSWVVVAGDSQARLTVQSLLSLILDEKRMGMIKGDLYKKHSDYEIVVDEIGMKLDFVWAPYVVNL
TSLMMGFKQNRTYPDVLVMGAGLWHMLHVNNASDYDVALENLRSSVVSLLPFSPELDTDGPVTGSVSVRSPHLFWLGMPILINGMLNTEEKREKMNDEMC
RAYDSALHNSRLLRRYGGPLLLLDIQSLSWNCGPRCTIDGMHYDGTVYEAAVHILLNALLIESHQKLGSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03210 unknown protein Potri.017G139800
[exp]
0 1
AT5G23750 Remorin family protein (.1.2) Potri.001G107000
[exp]
1.00 0.9399
AT5G57330 Galactose mutarotase-like supe... Potri.006G165400
[exp]
1.73 0.9319
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Potri.007G047000
[exp]
2.82 0.9375
AT1G76250 unknown protein Potri.005G249600
[exp]
5.65 0.9270
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.001G104600
[exp]
6.00 0.9204
AT1G75590 SAUR-like auxin-responsive pro... Potri.002G024500
[exp]
7.34 0.9078
AT3G05320 O-fucosyltransferase family pr... Potri.012G118800
[exp]
7.48 0.9071
AT4G30600 signal recognition particle re... Potri.006G183600
[exp]
7.74 0.9156
Potri.002G226400
[exp]
7.74 0.8879
AT5G58375 Methyltransferase-related prot... Potri.013G155800
[exp]
9.21 0.9146

Potri.017G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.