Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EXP2.10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03220 403 / 4e-143 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT3G55500 275 / 9e-93 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 274 / 3e-92 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 271 / 2e-91 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G39700 268 / 6e-90 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G05290 265 / 6e-89 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 263 / 3e-88 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G02260 260 / 6e-87 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT1G69530 259 / 8e-87 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT3G29030 258 / 4e-86 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080200 [exp] 451 / 4e-162 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.001G240900 [exp] 272 / 1e-91 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.009G031800 [exp] 271 / 2e-91 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.008G057100 [exp] 271 / 3e-91 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.008G088300 [exp] 270 / 9e-91 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 268 / 6e-90 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 267 / 7e-90 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.010G202500 [exp] 267 / 1e-89 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.013G060800 [exp] 265 / 4e-89 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027304 [exp] 400 / 5e-142 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10010454 [exp] 400 / 8e-142 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10039009 [exp] 399 / 2e-141 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1) Lus10003822 [exp] 402 / 4e-140 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10037164 [exp] 277 / 1e-93 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 276 / 2e-93 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040801 [exp] 271 / 5e-91 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 270 / 7e-91 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040286 [exp] 267 / 1e-89 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10026614 [exp] 265 / 6e-89 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.017G140000.1 pacid=42814102 polypeptide=Potri.017G140000.1.p locus=Potri.017G140000 ID=Potri.017G140000.1.v4.1 annot-version=v4.1 ATGTTCTCCCATAAAAAAGACAACAAGATGCCACCGCCATTACTTCAAGGCCCTATTCACACTCTCCTGAAACCTCTCCTCCTCCTCCTCCTCCTCCTCA CTCTCCCCCCCACCACCACCTCCCACACCTCTTCCACCACCACCCCTCCACCTCTGTCCACTTACCTATCCCAATGGCAACCCGCACGCGCTACTTACTA CGCAGCATCCGATCCCCGGGACACAGTAGGAGGCGCGTGTGGATATGGGGACTTGGTTAAGGCGGGATATGGAATGGCAACTGTAGCATTGAGTGAATCA ATGTTTGAACGTGGACAGATCTGTGGCGCGTGTTTTGAAATCAAATGTGTTGATGATTTGAGGTGGTGTATTCCTGGGACTTCTATTATTGTTTCTGTTA CTAATTTTTGTGCTCCAAATTATGGGTTCCCTTCTGATGCTGGTGGAAAATGTAATACTCCAAATAAGCACTTTGTGCTGCCCATTGAATCTTTTGAAAA GATTGCCATTTGGAAGGCTGCTAATATGCCTGTTCAGTACAGAAGGATTAAGTGCAGAAAGGAAGGAGGGATTCGGTTTACAATCTCTGGGTCCGGTATC TTCCTTTCTGTGCTGATCAGCAATGTTGCAGGTGCTGGAGACGTAACTTCAGTGAGGATTAAAGGTTCAAGAACGGGTTGGCTTGATATGGGTAGGAACT GGGGCCAAAACTGGCATGTTAATGCAAATTTACAGAATCAAGCTCTCTCATTTGAGGTCACCAGTAGTGATAAGATGACTGTTCTTTCTTACACCGTTGC TCCCAAAGATTGGAGATTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA
AA sequence Show only first row Show all	>Potri.017G140000.1 pacid=42814102 polypeptide=Potri.017G140000.1.p locus=Potri.017G140000 ID=Potri.017G140000.1.v4.1 annot-version=v4.1 MFSHKKDNKMPPPLLQGPIHTLLKPLLLLLLLLTLPPTTTSHTSSTTTPPPLSTYLSQWQPARATYYAASDPRDTVGGACGYGDLVKAGYGMATVALSES MFERGQICGACFEIKCVDDLRWCIPGTSIIVSVTNFCAPNYGFPSDAGGKCNTPNKHFVLPIESFEKIAIWKAANMPVQYRRIKCRKEGGIRFTISGSGI FLSVLISNVAGAGDVTSVRIKGSRTGWLDMGRNWGQNWHVNANLQNQALSFEVTSSDKMTVLSYTVAPKDWRFGQTFEGKQFET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	0	1	EXP2.10
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.003G212400 [exp]	1.73	0.8430
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.016G003500 [exp]	3.00	0.7539
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	4.24	0.7758
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	4.89	0.7981
AT2G18910			hydroxyproline-rich glycoprote...		Potri.006G166400 [exp]	6.63	0.8013
AT3G08880			unknown protein		Potri.012G107200 [exp]	11.61	0.7326
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.009G115500 [exp]	14.83	0.7765	Pt-CAP1.2
AT1G69980			unknown protein		Potri.008G191700 [exp]	18.70	0.7496
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	22.80	0.6700
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	24.24	0.7347

Compare expression of checked genes

Potri.017G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.