Plant FIBer expression Database

Potri.017G140066 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23145 39 / 6e-05 RALFL2 RALF-like 2 (.1)
AT1G61566 38 / 9e-05 RALFL9 ralf-like 9 (.1)
AT3G04735 38 / 0.0001 RALFL21 RALF-like 21 (.1)
AT4G11510 38 / 0.0001 RALFL28 ralf-like 28 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G102400
[exp]
40 / 2e-05 AT1G23145 50 / 2e-09 RALF-like 2 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G140066.1 pacid=42812943 polypeptide=Potri.017G140066.1.p locus=Potri.017G140066 ID=Potri.017G140066.1.v4.1 annot-version=v4.1
ATGGCCTTGACCAGAAGGCTGGCTATTTTAGGGTTCTGGATTTCCATGCTCTTAGTGACGATGAACCCCTTTCTGGCAAGAGAATTAAGAGATGACACAA
GTGCCGTAGTGAAGTTTCCCTACAAAAGCCTTGGCATCTTGGAAACATACATTAGTCCTCCAACTATGGGGGTAGGTGGTAGTCAAATATGTGACCCAAA
AAAGGATCCTGCCATATGTCAACAACCGCCTGAGAATCCATGGCGCAGAAGTTGTGAAAAAGAGTTGCGATGCAGGAGCGCCCCCCCACCGGCGCCTTGA
AA sequence
>Potri.017G140066.1 pacid=42812943 polypeptide=Potri.017G140066.1.p locus=Potri.017G140066 ID=Potri.017G140066.1.v4.1 annot-version=v4.1
MALTRRLAILGFWISMLLVTMNPFLARELRDDTSAVVKFPYKSLGILETYISPPTMGVGGSQICDPKKDPAICQQPPENPWRRSCEKELRCRSAPPPAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G23145 RALFL2 RALF-like 2 (.1) Potri.017G140066
[exp]
0 1
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.008G223500
[exp]
4.24 0.6379
AT4G38140 RING/U-box superfamily protein... Potri.009G170460
[exp]
4.89 0.6137
Potri.014G188601
[exp]
19.54 0.7183
AT4G22080 RHS14 root hair specific 14 (.1) Potri.004G007300
[exp]
22.80 0.6095
AT5G47670 CCAAT NF-YB6, L1L "nuclear factor Y, subunit B6"... Potri.006G005000
[exp]
23.66 0.6095
AT3G02100 UDP-Glycosyltransferase superf... Potri.010G084900
[exp]
26.49 0.6001
AT5G26330 Cupredoxin superfamily protein... Potri.006G259000
[exp]
28.93 0.5756
AT5G13620 unknown protein Potri.008G045000
[exp]
29.56 0.5816
AT5G26330 Cupredoxin superfamily protein... Potri.002G052500
[exp]
38.00 0.5207
AT1G53210 sodium/calcium exchanger famil... Potri.004G052800
[exp]
46.54 0.5539

Potri.017G140066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.