Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65780 572 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 558 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37150 459 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 453 / 3e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 447 / 1e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 447 / 1e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 428 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 369 / 3e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 204 / 6e-55 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 184 / 6e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140501 [exp] 1479 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140200 [exp] 1425 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 1329 / 0 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 1112 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 1092 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077100 [exp] 896 / 0 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 667 / 0 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077800 [exp] 667 / 0 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077500 [exp] 665 / 0 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 520 / 3e-161 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 398 / 2e-125 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035774 [exp] 398 / 4e-125 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 384 / 3e-119 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 189 / 2e-49 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 165 / 3e-42 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 161 / 4e-40 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 159 / 2e-39 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 154 / 2e-38 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 151 / 2e-37 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.017G140300.4 pacid=42814166 polypeptide=Potri.017G140300.4.p locus=Potri.017G140300 ID=Potri.017G140300.4.v4.1 annot-version=v4.1 ATGAAGATTTCTGAGAATGATGATCTCGAAGATATATTTCTTGACCATCGGGTTGAAGTGCTTTATCATTGCTTTGCCCCGTCAACCGGGTGGAAGCACA CTGTAGATTCAATGATAAATTTGCTTGAAGATCCTAGGCATCAGTACCGCAGGTACTTGGAAAACATGAAAAAAGAGAACGAGGGAGGGGATCGGCATGA TGGAATGACTGAATTTCAAGAGATGAACAGCAACAAAGAGAAGGATGAAGTGGTCGGTGATCAAAACCAGAAGGGCAGGAACAGCAGGAAAGTTCTGAAG AAAATTCTTTTACAGGCATTGAAAGACAACAAGAAAACTGAAAAACAGAAACAGAAGGTTTCTTATCATCAAGATAAGCTTCCAAGGTGTTTGGGAAAGG GAGATCAATATGGAAAGGAAAACAAGGAAGATAATATTTTCCCGTTCGAGGAATTTGTAAAGAAAAGGTTCAAAATCCTTAGTGAGAAGCTGGACCTTTT AATTGTAGGTTTGTATACGCATTTGCCAACGTCTGTCATTTCATTAGAAGTTGTGAAGAACATGATAAAAGCTCTTGATTCACTCAGCCGCCTGAAAACC TTGTTGAATGGTGTTAGCATTGGAGATGAAGGTTTAAAGCTAGTCCTCCATGATTTCGAAGATGAAGATAACAGTGCTTGTCAATTTTCATGGTTGGCCA CTCCAAGAAAGGATTGCATTCGGATACTGAATTCACTTCCTCGATCATTTGACGTGCCCAATATTTTTGAAAGGTATCAAGTCAGAAACTTTTGCTTGGA AAATGCATGTCTGATTTTCTGTACCGCTTCAAGCTCTGCCAAGTTGCACACAGAAGGAATGACACCGATAAAATTGTTGGTTGTTGATGAAGCTGCGCAG CTTAAAGAATGTGAATCGACCATTCCATTGCAGCTTTCTGGTCTTCGCCATGCCGTTCTTATAGGTGACGAGCGCCAACTTCCTGCCATGGTTCAAAGCG AGATTTCCAAGGAAGCTGAATTCGGGAGGAGTTTGTTCGAGAGATTGGTCATACTGGGACACGAGAAACACCTACTGAATATGCAGTACAGGATGCATCC ATCTATAAGCTTATTCCCAAATAAAGAGTTCTATGATGGGCTAATGCAGGATGCTTCAACTGTCAAAGAAAGAAACTATCAGAAACAATTTCTTCAAGGC AATATGTATGGGCCTTACTCATTTATTAATGTAGCCAGTGGGAAAGAAGAATTCGATAACGGTGGCAGCAAGAAAAATTTGGTGGAGGTTGCTGTAGTTT CAGAGGTAGTTGCAAGCCTTTTTAAAGAATTTACAAGGGCAAGAAAGAGGATGAGCGTAGGAGTCATATCACCGTACAACGCTCAAGTTTATGCAATTCA AGAAAAAATTGGAAAGACTTACAGTGCACATAGTGATTTTGCAGTAAATATTCGGTCTGTCGATGGATTTCAAGGAGGCGAGGAGGATGTTATAATTATC TCTACTGTGAGATGTAATGCAAATGGAAAAATAGGTTTCCTTGCCGATCGCCAAAGGGTGAACGTGCCATTGACCCGTGCAAGGCACTGCCTCTGGATAT TGGGAAATGGAGCAACTCTTGTCAACAGCGATTCTATTTGGAAGAAATTAGTTACTGATGCCAAGGAACGGGGGTGTTTCTATAATGTCGAAGAGGATAA AGGCTTGTCTAAGGCTATTACGGATGCCTTCTTAGAATCGGACCAACTTGATGCTCTGCTGAATGTGAATTCTCCACTGTTCAGAAATGCAAGATGGAAG TTTTGCTTCAGTAACGATTTTCGGAAATCCATTCTGAAAGTGAGAAATGAGGCTCGTCAGGAAGTGTTTTCTTTGTTGTCAAAGCTTTCGAGTGGCTGGC GGGAATCTCCTGAAGAGAGAATCATCGTTGTCCGACATGGAACTTCTTCTTTACTGTTAGAACATTACAGAGTCAATGATCAGCTTCATCTGATTTGGAC AGTGGATATAATCAAGGAAAACTCAAACCACACACAAATTCTCAAGGTGTGGGATGTTTTACCATTACCTGATTTACCAAAACTAGCAAGGCATCTCGAT GATGTCTTTGGGAATTATACAGTTGATAAGATGAATCGCTGCAAGCACAAATGTATAGAAGGGAATTTGGTTGTTCCAATGAGATGGCCACTGTATTCCG ATGGTGCTGCCGAGCGTAGTATCCCTGAAATTGATCCTGTAGAACTTCTGTCGCAACCTTCGGCTTCACTTATGGCGCGGACACCACAAGCGAAGACACC AAATCGACAACCCAGATTACCCAAGTATACGAATAAAGATAACAAAAAATATCGCAGCACATCACTTTTTGGATGGGATAATGAACCTATATGGGTCTAT TTCATTATTTTTATTTTGATTATTTTGATTATTTGTGTTATTCAATTTTAA
AA sequence Show only first row Show all	>Potri.017G140300.4 pacid=42814166 polypeptide=Potri.017G140300.4.p locus=Potri.017G140300 ID=Potri.017G140300.4.v4.1 annot-version=v4.1 MKISENDDLEDIFLDHRVEVLYHCFAPSTGWKHTVDSMINLLEDPRHQYRRYLENMKKENEGGDRHDGMTEFQEMNSNKEKDEVVGDQNQKGRNSRKVLK KILLQALKDNKKTEKQKQKVSYHQDKLPRCLGKGDQYGKENKEDNIFPFEEFVKKRFKILSEKLDLLIVGLYTHLPTSVISLEVVKNMIKALDSLSRLKT LLNGVSIGDEGLKLVLHDFEDEDNSACQFSWLATPRKDCIRILNSLPRSFDVPNIFERYQVRNFCLENACLIFCTASSSAKLHTEGMTPIKLLVVDEAAQ LKECESTIPLQLSGLRHAVLIGDERQLPAMVQSEISKEAEFGRSLFERLVILGHEKHLLNMQYRMHPSISLFPNKEFYDGLMQDASTVKERNYQKQFLQG NMYGPYSFINVASGKEEFDNGGSKKNLVEVAVVSEVVASLFKEFTRARKRMSVGVISPYNAQVYAIQEKIGKTYSAHSDFAVNIRSVDGFQGGEEDVIII STVRCNANGKIGFLADRQRVNVPLTRARHCLWILGNGATLVNSDSIWKKLVTDAKERGCFYNVEEDKGLSKAITDAFLESDQLDALLNVNSPLFRNARWK FCFSNDFRKSILKVRNEARQEVFSLLSKLSSGWRESPEERIIVVRHGTSSLLLEHYRVNDQLHLIWTVDIIKENSNHTQILKVWDVLPLPDLPKLARHLD DVFGNYTVDKMNRCKHKCIEGNLVVPMRWPLYSDGAAERSIPEIDPVELLSQPSASLMARTPQAKTPNRQPRLPKYTNKDNKKYRSTSLFGWDNEPIWVY FIIFILIILIICVIQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	0	1
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	1.00	0.9267
AT3G24150			unknown protein		Potri.006G067100 [exp]	1.41	0.8642
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	4.89	0.8401
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	5.91	0.8322
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	10.72	0.8020	Pt-RPT2.4
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	10.95	0.8103
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	12.72	0.8062
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	12.84	0.7844
					Potri.008G126001 [exp]	13.41	0.7555
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	13.96	0.8123

Compare expression of checked genes

Potri.017G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.