Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 129 / 1e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G65780 127 / 5e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 107 / 3e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 93 / 6e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 82 / 4e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140200 [exp] 370 / 2e-121 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 321 / 6e-103 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 311 / 2e-99 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077100 [exp] 257 / 3e-80 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077650 [exp] 254 / 2e-78 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 253 / 2e-78 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077800 [exp] 155 / 9e-44 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077600 [exp] 151 / 2e-42 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 140 / 2e-38 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 88 / 5e-20 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 77 / 2e-16 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 64 / 6e-12 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G140400.2 pacid=42813822 polypeptide=Potri.017G140400.2.p locus=Potri.017G140400 ID=Potri.017G140400.2.v4.1 annot-version=v4.1 ATGATGGAGAAGACTACAGCGAAAACTGAAGAAGAAGTTGCTGGTAGAAGCTTGTTAGACTTGGTGTTCTCTTGGTCTATCACGGATGTACTTAACAGAG ATCTTTACAAAAATCAGGTGAAGAAGATACCAGAGACATTCACGTCAACGTCACATTACATGAAGTCATTCATTCCTGCTCTAATCGAGGAAACTCGTGC AGATTTGTGCTCAAACATGATGAAGGTCTCCCAAGCACCTACAAGGGAGATCTTTTCAATTGAAAGATCAAAAGAGTATAAACCTCCCAAAGACTTGTTT TATAAGATGTGGTTGAATAGAATGAGAAAAACTGGAAATGTGAAAGGAATATACGAGCCTGAGGTTGGAGATCTCATTGCTTTGACAGATGCAAGACCCA AAGACATTGCTGATTTGAACAGGCCTGGGATAAACTATCTTCTTGCATATGTTCAGAGGCTATCTAATGGGCTGGATGATGACGATAATCATGAAACGTT ATGGCTGGATGATGACGATAATAATGAAACGTTATCAATTCTCACATCCAAACCCATTCAATTTGAACGTAGAAAACAAGCAGAATAA
AA sequence Show only first row Show all	>Potri.017G140400.2 pacid=42813822 polypeptide=Potri.017G140400.2.p locus=Potri.017G140400 ID=Potri.017G140400.2.v4.1 annot-version=v4.1 MMEKTTAKTEEEVAGRSLLDLVFSWSITDVLNRDLYKNQVKKIPETFTSTSHYMKSFIPALIEETRADLCSNMMKVSQAPTREIFSIERSKEYKPPKDLF YKMWLNRMRKTGNVKGIYEPEVGDLIALTDARPKDIADLNRPGINYLLAYVQRLSNGLDDDDNHETLWLDDDDNNETLSILTSKPIQFERRKQAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65810			P-loop containing nucleoside t...		Potri.017G140400 [exp]	0	1
					Potri.011G015725 [exp]	11.13	0.9080
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.002G028400 [exp]	15.74	0.9387	Pt-APETALA3.1
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	25.09	0.9304
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Potri.015G106900 [exp]	26.60	0.8916	Pt-LEAFY.1
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G158900 [exp]	27.60	0.9303
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	31.89	0.9278
AT1G09240		ATNAS3	ARABIDOPSIS THALIANA NICOTIANA...		Potri.005G014300 [exp]	32.61	0.9295
AT4G27300			S-locus lectin protein kinase ...		Potri.011G126251 [exp]	38.41	0.8992
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	42.66	0.9273
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.017G002600 [exp]	43.54	0.9200

Compare expression of checked genes

Potri.017G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.