Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65780 797 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 555 / 2e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G05540 540 / 4e-178 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 468 / 1e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 461 / 5e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 446 / 2e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 433 / 3e-135 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 381 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 206 / 9e-55 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 184 / 5e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140200 [exp] 2003 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 1951 / 0 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 1590 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 1551 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140300 [exp] 1481 / 0 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077100 [exp] 1403 / 0 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077800 [exp] 939 / 0 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 722 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 718 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 505 / 7e-152 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 404 / 6e-124 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 401 / 8e-123 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 388 / 4e-117 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 189 / 2e-48 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 165 / 2e-41 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 162 / 1e-39 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 158 / 9e-39 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 153 / 1e-37 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 153 / 2e-37 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.017G140501.1 pacid=42814264 polypeptide=Potri.017G140501.1.p locus=Potri.017G140501 ID=Potri.017G140501.1.v4.1 annot-version=v4.1 ATGATGGAGAAGACTACAGCGAAAACTGAAGAAGAAGTTGCTGGTAGAAGCTTATTAGATTTGGTGTTCTCTTGGTCTATCACGGATGTACTTAACAGAG ATCTTTACAAAAATCAGGTGAAGAAGATACCAGAGACATTCACGTCAACGTCACATTACATGAAGTTATTCATTCCTGCTCTAATCGAGGAAACTCGTGC AGATTTGTGCTCAAACATGATGAAGGTCTCCCAAGCACCTACAAGGGAGATCTTTTCAATTGAAAGATCAAAAGAGTATAAACCTCCCAAAGACGTATTT TATAAGATATGGTTGAATAGAATGAGTAAAACTGGAAATGGGAAAGGAATATACGAGCCCGAGGTTGGACATCTCATTGCTTTGACAGATGCAAGACCGA AAGACATTGCTGATTTGAACAGTCCTGGGATAAACTATCTTCTTGCTTATGTTCATGAGGTATCTAATGGGCTGGATGATGACAATAATCATGAAACGTT ATCAATTCTCACATCCAAACCCATTCAATTTGAACTAGAAAACAAGCAGAATAAAAGGGAGTCTGTCATTGCTGGACAAGAGATTCAAAAGAAAAGCAGA GCCACTTTCTTCGTTGTTTACCTAGCAAACATGACGACGAATGCCCGCATATGGAGATCATTGAACTCAGATCTGCAAGGAGGGAACACGAACGTTATCC AGAATGTGCTTGAAACTAGTTCACCTGATAGCCAAGATTGTTCTCACTGCTTATCTGAAGTGAATAGAAGTGCTGCACTTTCTGGTATGGAAGAAACCAT AATCAGCTCTTATAATTTAAATGAATCACAGGAAAATGCAATTGTAAGCTGCATCGGTCTGAGTGAATGCCAGCATCAAAGCACTGTCAAACTAATTTGG GGTCCTCCAGGGACTGGAAAGACAAAGACAGTTGGTTTATTACTGTTTTCTCTTCTTAAATTGAAGTGCAGGACACTTACATGTTCTCCTACCAATATTG CTGTGTTGCAAGTGACATCGGGACTCCTAAAGCTAGTTACAGACTCTCTTGAATATGACACCTATGGACTTGGAGATGTAGTTCTCTTTGGGAATGGGGG GCGACTGAAGATTTCTGAGAATGATGATCTTGAAGATATATTTCTTGACCATCGTGTTGAAGTGCTTTATCTTTGCTTTGCCCCGTCAACCGGGTGGAAG CACACTGTAGATTCAATGATAAATTTGCTTGAAGATCCTGAGCATCAGTACCGCAGGTACTTGGAAAACATGAAAAAAGAGAACGAGGGAGGGGATCGGG ATGATGAAATGATTGAATTTCAAGAGATGAACAGCAACAAAGAGAAGGATGAAGTGGTCAGTGAACAAAACCAGAAGGGCAGGAACAGCAGGAAAGTTCT GAAGAAAATTCTTTTACAGGCATTGAAAGACAACAAGAAAACTGAAAAAAAGAAACAGAAGGTTTCTTATCATCAAGATAAGCTTCCAAGGTGTTTGGGA AAGGGAGATCAATATGGAAAGGAAAACAAGGAAGATAATATTCTGCCGTTCGAGGAATTTGTAAAGAAAAGGTTCAATATCCTTAGTGAGAAGCTGGACT TTTTAATTTTTGGTTTGTATACGCATTTGCCAACGTCTGTCATTTCATTCGAAGTTGTGAAGAACATGATAAAAGCTCTTGATTCACTCAGCTGCCTCAA AACATTGTTGAATGGTGTTAGCCTAGGAGATGGAGGTTTAGAGCTAGACATCAATGATTTTGAAAATGAAGAAAGCAGTGCCTGTCAATATTCAAGGTTG GCCACTAAAAGAAAGGATTGCATTCAGATACTGAATTCACTTCCTCGATCATTTGACGTGCCCAATATTTTTGAAAGTTATCAAGTGAGAAACTTTTGCT TGGAAAATGCATGTCTGATTTTCTGTACCGCTTCAAGCTCTGCCATGTTGCACACAGAAGGAATGAAACCGATAAAATTGTTGGTTGTTGATGAAGCTGC GCAGCTTAAAGAATGTGAATCCACCATTCCATTGCAGCTTTCTGGTCTTCGCCATGCCGTTCTTATAGGTGACGAGCGCCAACTTCCTGCCATGGTTCAG AGTCAGATTTCCGAGAAAGCTGAATTCGGGAGGAGCTTGTTCGAGAGATTGGTCATACTGGGACACGAGAAACACCTACTGAATATGCAGTACAGGATGC ATCCATCTATAAGCTTATTCCCAAATAAAGAGTTCTATGGTGGGCTAATTCAGGATGCTTCAACTGTGAAAGAAAGAAACTATCAGAAACTATTTCTTCA AGGAAATATGTATGGGCCTTACTCATTTATTAATGTAGCCAGTGGGAAAGAAGAATTCAATAACGGTGGCAGCAAGAAAAATTTGGTGGAGGTTGCTGTA GTTTCAGAGCTAGTTGCAAGCCTTTTTAAAGAATTTACAAGGGCAAGAAAGAGGATGAGCGTAGGAGTCATATCACCGTACAACGCTCAAGTTTATGCAA TTCAAGAAAAAATTGGAAAGACTTACAGTGCACATAGTGATTTTGCCGTAAATATTCGGTCTGTCGATGGATTTCAAGGAGGCGAGGAGGATGTTATAAT TATCTCTACTGTGAGATGTAATGCAAATGGAAAAATAGGTTTCCTTGCCAATCGCCAAAGGGTGAATGTGGCATTGACCCGTGCAAGGCACTGCCTCTGG ATATTGGGAAATGGAGCAACTCTTGTCAACAGCGATTCTATTTGGAAGAAATTAGTTACTGATGCCAAGGAACGGGGGTGTTTCTATAATGCCGAAGAGG GTAAAAGCTTGTCTAAGGCTATTACGGATGACTTTTTAGAATCGGACCAACTTGATGCTCTGCTGAATGTGAATTCTCCACTGTTCAGAAATGCAAGATG GAAGTTTTGCTTCAGTAACGATTTTCGGAAATCCATTCTGAAAGTGAGAAATGAGGCTCGTCAGGAAGTGTTTTCTTTGTTGTCAAAGCTTTCGAGTGGC TGGCGGGAATCTCCTGAAGAGAGAATCATCGTTGTCCGACATGGAACTTCTTCTGAACTGTTAGAACAATACAGAGTCAATGATCAGCTTAAACTGATTT GGACAGTGGATATAATCAAGGAAAACTCAAACCACACACAAATTCTCAAGGTGTGGGATGTTTTACCATCTCCTGATTTACCAAAACTAGCAAGGCATCT CGATGATGTCTTTGGGAATTATACAGTTGATAAGATGAATCGCTGCAAGCACAAATTTATAGAAGGGAATTTGGTTGTTCCAATGAGATGGCCACTGTAT TTCGATGGTGCTGCCGAGCGTAGTATCCCTGAAATTGATCCTGTAGAACTTCTGTCGCAACCTTCGGCTTCACTTATGGCGCGGACACCAAAAGCGAAGA CACCAAATCCACATCGCAGATTACCTAAGTATATGAATAAAAACAACAAAAAATATCGCAGCACATCACTTTTTGGATGGGATAATGAACCCATATGGGT CTATTTCATCATTTTTATTTTGATTATTTTAATTATTTATGTTCTTCAATTTTAA
AA sequence Show only first row Show all	>Potri.017G140501.1 pacid=42814264 polypeptide=Potri.017G140501.1.p locus=Potri.017G140501 ID=Potri.017G140501.1.v4.1 annot-version=v4.1 MMEKTTAKTEEEVAGRSLLDLVFSWSITDVLNRDLYKNQVKKIPETFTSTSHYMKLFIPALIEETRADLCSNMMKVSQAPTREIFSIERSKEYKPPKDVF YKIWLNRMSKTGNGKGIYEPEVGHLIALTDARPKDIADLNSPGINYLLAYVHEVSNGLDDDNNHETLSILTSKPIQFELENKQNKRESVIAGQEIQKKSR ATFFVVYLANMTTNARIWRSLNSDLQGGNTNVIQNVLETSSPDSQDCSHCLSEVNRSAALSGMEETIISSYNLNESQENAIVSCIGLSECQHQSTVKLIW GPPGTGKTKTVGLLLFSLLKLKCRTLTCSPTNIAVLQVTSGLLKLVTDSLEYDTYGLGDVVLFGNGGRLKISENDDLEDIFLDHRVEVLYLCFAPSTGWK HTVDSMINLLEDPEHQYRRYLENMKKENEGGDRDDEMIEFQEMNSNKEKDEVVSEQNQKGRNSRKVLKKILLQALKDNKKTEKKKQKVSYHQDKLPRCLG KGDQYGKENKEDNILPFEEFVKKRFNILSEKLDFLIFGLYTHLPTSVISFEVVKNMIKALDSLSCLKTLLNGVSLGDGGLELDINDFENEESSACQYSRL ATKRKDCIQILNSLPRSFDVPNIFESYQVRNFCLENACLIFCTASSSAMLHTEGMKPIKLLVVDEAAQLKECESTIPLQLSGLRHAVLIGDERQLPAMVQ SQISEKAEFGRSLFERLVILGHEKHLLNMQYRMHPSISLFPNKEFYGGLIQDASTVKERNYQKLFLQGNMYGPYSFINVASGKEEFNNGGSKKNLVEVAV VSELVASLFKEFTRARKRMSVGVISPYNAQVYAIQEKIGKTYSAHSDFAVNIRSVDGFQGGEEDVIIISTVRCNANGKIGFLANRQRVNVALTRARHCLW ILGNGATLVNSDSIWKKLVTDAKERGCFYNAEEGKSLSKAITDDFLESDQLDALLNVNSPLFRNARWKFCFSNDFRKSILKVRNEARQEVFSLLSKLSSG WRESPEERIIVVRHGTSSELLEQYRVNDQLKLIWTVDIIKENSNHTQILKVWDVLPSPDLPKLARHLDDVFGNYTVDKMNRCKHKFIEGNLVVPMRWPLY FDGAAERSIPEIDPVELLSQPSASLMARTPKAKTPNPHRRLPKYMNKNNKKYRSTSLFGWDNEPIWVYFIIFILIILIIYVLQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	0	1
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	1.00	0.9267
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	2.00	0.8783
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	4.47	0.8433
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.007G082200 [exp]	8.94	0.8290
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	10.09	0.8036
					Potri.001G062301 [exp]	11.40	0.8077
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	20.97	0.7920
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Potri.009G041000 [exp]	21.21	0.8172
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	22.22	0.8118
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	23.36	0.8550

Compare expression of checked genes

Potri.017G140501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.