Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65780 777 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 528 / 1e-173 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 528 / 4e-169 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G37150 452 / 6e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 445 / 2e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 445 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 428 / 2e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 375 / 3e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 191 / 5e-50 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 181 / 3e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140501 [exp] 1936 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140200 [exp] 1904 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 1551 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 1511 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077100 [exp] 1384 / 0 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140300 [exp] 1303 / 0 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077800 [exp] 904 / 0 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 684 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 679 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 476 / 4e-142 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 401 / 8e-123 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 396 / 2e-121 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 389 / 9e-118 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 182 / 3e-46 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 166 / 6e-41 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 163 / 3e-40 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 161 / 3e-40 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 153 / 2e-37 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10038906 [exp] 152 / 2e-37 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.017G140601.1 pacid=42813498 polypeptide=Potri.017G140601.1.p locus=Potri.017G140601 ID=Potri.017G140601.1.v4.1 annot-version=v4.1 ATGGAGAAGACTGCGGCGAAAACTGAAGAAGTTGCTGGTAGAAGCTTATTAGATTTGGTGTTCTCTTGGTCTATCAGGGATGTACTAAACAGAAATCTTT ACAAAAATCAGGTGAAGAGGATACCAGAGACATTCACGTCAATGTCACATTACATGAAGTCATTCATTCCTGGTCTAATCGAGGAAACTCGGGCAGATTT GTGCTCAAACATGATGAAGGTCTCCCAAGGACCTACAAGGGAGATCTTCTCAATTGAAAGATCAAAAGAGTATAAACCTCCCAAAGACTTGTTTTATAAG ATATGGTTGAAAAGAATGGGAATAACTGGAAATGGGAAAGGAATATACGAGCCTGAGGTTGGAGATCTCATTGCTTTGACAGATGCAAGACCCAAAGACA TTGCTGATTTGAACAGGCCTGGGATAAACTATCTTCTTGCTTATGTTCATAGGCTACCTAATGGGCTGGATGATGACGATAATCATGAAATGCTATCAAT TCTCACATCCAAACCCATTCAATTTGAATTAGAAAATAAGCAGAATAAAAGGGAGTCTGTCATTGCTGGACAAGAGATTCAAAAGAAAAGCAGAGCCACT GTCTTCGTTGTTTACCTAGCAAACATGACGACGAATGTTCGCATATGGAGATCATTGAACTCAGATCTGCAAGGAGGGAACACGAACGTTATCCAGAATG TGCTTGAAACTAGTTCACCTGATAGCCAAGATTGTTCTCACTGCTTATCTGAAGTGAATAGAAGTGCTGCTTTTTCTGGTATGGAAGAAACCATAATCAG CTCTTATAATTTAAATGAATCACAGGAAAATGCAATTGTAAGCTGCATCGGTCTGAGTGAATGCCAGCATCAAAGCACTGTCAAACTAATTTGGGGTCCT CCAGGGACTGGAAAGACAAAGACAGTTGGTTTATTATTGTTTTCTCTACTTAAATTGAAGTGCAGGACACTTACATGTGCTCCAACCAATATTGCTGTGT TGCAAGTGACATCGGGACTCCTAAAGCTAGTTACAGACTCTCTTGAATATGACACTTATGGACTTGGAGATATAGTTCTCTTTGGGAATGGGGAGCGAAT GAAGATTTCTGAGAATGATGATCTTGAAGATATATTTCTTGACCATCGTGTTGAAGTGCTTTATCATTGCTTTGCCCCGTCAACCGGGTGGAAGCACACT GTAGATTCAATGATAAATTTGCTTGAAGATCCTGAGCATCAGTACCGCAGGTACTTTGAAATCATGAAAAAAGAGAATGTGGGAGGGGGTCAGGATGATG GAATGATTGAATTTGAAGAGATGAACAGAAACAAAGAGAAGGACGAAGTGGTCAGTGAACAAAACCAGAAGGGCAGGAACAGCAGGAAAGTTATGAAGAA AATTTTAGTACAGGCATTGAAAGACAACAAGAAAACTGAAAAAAAGAAACAAAAGGTTTCTTATTATCAAGATAAGCTTCCAAAGTGTGTGGGAAAAGGA GATCAATATGGAAAGGAAAACAGGGAAGATGATATTCTCCCGTTCGAGGAATTTGTAAAGAAAAGGTTCAAAATCCTTAGTGAGAAGCTGGACATTTTAA TTGTAGGTTTGTACACGCATTTGCCAACGTCTGTCATTTCATTAGAAGTTGTGAAGAACATGATAAAAGCTCTTGATTCACTCAGCCGCCTGAAAACCTT GTTGAATGGTGTTAGCATTGGAGATGAAGGTTTAAAGCTAGTCCTCAATGATTTCGAAGATGAAGAAAGCAGTGCTTGTCAATTTTCATGGTTGGCCACT AAAAGAAAGGATTGCATTCAGATACTGAATTCACTTCCTCGATCATTTGACGTGCCCAATATTTTTAAAAGTTATCAAGTCAGAAACTTTTGCTTGGAAA ATGCCTGTCTAGTTTTCTGTACCGCTTCAAGCTCTGCCAAGTTGCACACAAAAGGAATGAAACCGATAAAATTGTTGGTTGTTGATGAAGCTGCGCAGCT TAAAGAATGTGAATCGACCATTCCATTGCAGCTTTCTGGTCTTCGCCATGCCGTTCTTATAGGTGACGAGCGCCAACTTCCTGCCATGGTTCAGAGTCAG ATTTCCGAGAAAGCTGAATTTGGAAGGAGTTTGTTCGAGAGATTGGTCATACTGGGACACGAGAAACACCTACTGAATATGCAGTACAGGATGCATCCAT CTATAAGCTTATTCCCAAATAAAGTGTTCTATGATGGGCTAATCCAGAATGCTTCAACTGTCAAAGAAAGAAACTATCAGAAACGATTCCTTCAAGGCAA TATGTATGGGCCTTACTCATTTATTAATTTAGCCAATGGGGAAGAGCAATTCAATGACGATTGCAGCACGAAAAATTTGGTGGAGGTTGCTGTAGTTTCA GAGCTAGTTGCAAGTCTTTTTAAAGGGTTTACCAAGGCAAGAAAGGGGATGAGCGTAGGAATCATATCACCGTACAGGGCTCAAGTTTATGCAATTCAAG AAAAGATTGGAAAGACTTACAGTGCATATAGTGACTTTGCCGTAAATATTCGGTCTGTCGATGGATTTCAAGGAGGCGAAGAGGATGTTATAATTATCTC TACTGTCAGATGTAATGCAAACGGAAAAATAGGTTTCCTTTCCAATCGCCAAAGGGTTAATGTGGCATTGACCCGTGCAAGGTACTGCCTCTGGATATTG GGAAATGGAGCAACTCTTGTCAACAGTAACTCTATTTGGAAGAAATTAGTTACTGACGCTAAGGAACGGAGGTGTTTCTATAATGCCGAAGACGATAAAA GCTTGTCTAAGGCTATTGTGGATGCCTTGGTGAATGTGAATTCTCTGCTGTTTAGAAATGCAAGATGGAAGTTTTGCTTCAGTAACGATTTTCGGAAATC CATTCTGAAAGTGAGAAATGAGGCTCGTCAGGAAGTGATTTCTTTGCTGGCAAAGCTTTCGAGTGGCTGGCGGCAATATCCTGAAGAGAGAAACATCGTT GTCCGACATGGAACTTCTTCTGTACTGTTAGAACAATACAGAGTCAATGACCAGCTTCGTCTGATTTGGACAGTGGATATAATCAAGGAAAACTCAAACC ACACACAAATTCTCAAGGTGTGGGATGTTTTACCATTACCTGATTTACCAAAACTACCAAGGCGTCTCGATGATGTCTTTGGGAATTATACAGTTGATAA GATGAATCGCTGCAAGCACAGATGTATAGAAGGGAATTTGGTTGTTCCAATGAGATGGCCAATGGATTTCGATGGTGCTGCCGCGCGTAGCATCCCTGAA ATTGATCATGTAAAACTTCCGTCGCAACCTTTGTCTTCACTTCTGGTGCGGACACCACAAGTGAAGACACGAGTACCATACCGCAGATTACCTGAATATA TAGAGAAAGACGACAAAAGAAATCTCCGCATATCACTTTTTGGATGGGAGCTCATATGCGTCTATTTCCTTGTTTTTATTTTGATTATTTGTGTTATTCG GTTTTAA
AA sequence Show only first row Show all	>Potri.017G140601.1 pacid=42813498 polypeptide=Potri.017G140601.1.p locus=Potri.017G140601 ID=Potri.017G140601.1.v4.1 annot-version=v4.1 MEKTAAKTEEVAGRSLLDLVFSWSIRDVLNRNLYKNQVKRIPETFTSMSHYMKSFIPGLIEETRADLCSNMMKVSQGPTREIFSIERSKEYKPPKDLFYK IWLKRMGITGNGKGIYEPEVGDLIALTDARPKDIADLNRPGINYLLAYVHRLPNGLDDDDNHEMLSILTSKPIQFELENKQNKRESVIAGQEIQKKSRAT VFVVYLANMTTNVRIWRSLNSDLQGGNTNVIQNVLETSSPDSQDCSHCLSEVNRSAAFSGMEETIISSYNLNESQENAIVSCIGLSECQHQSTVKLIWGP PGTGKTKTVGLLLFSLLKLKCRTLTCAPTNIAVLQVTSGLLKLVTDSLEYDTYGLGDIVLFGNGERMKISENDDLEDIFLDHRVEVLYHCFAPSTGWKHT VDSMINLLEDPEHQYRRYFEIMKKENVGGGQDDGMIEFEEMNRNKEKDEVVSEQNQKGRNSRKVMKKILVQALKDNKKTEKKKQKVSYYQDKLPKCVGKG DQYGKENREDDILPFEEFVKKRFKILSEKLDILIVGLYTHLPTSVISLEVVKNMIKALDSLSRLKTLLNGVSIGDEGLKLVLNDFEDEESSACQFSWLAT KRKDCIQILNSLPRSFDVPNIFKSYQVRNFCLENACLVFCTASSSAKLHTKGMKPIKLLVVDEAAQLKECESTIPLQLSGLRHAVLIGDERQLPAMVQSQ ISEKAEFGRSLFERLVILGHEKHLLNMQYRMHPSISLFPNKVFYDGLIQNASTVKERNYQKRFLQGNMYGPYSFINLANGEEQFNDDCSTKNLVEVAVVS ELVASLFKGFTKARKGMSVGIISPYRAQVYAIQEKIGKTYSAYSDFAVNIRSVDGFQGGEEDVIIISTVRCNANGKIGFLSNRQRVNVALTRARYCLWIL GNGATLVNSNSIWKKLVTDAKERRCFYNAEDDKSLSKAIVDALVNVNSLLFRNARWKFCFSNDFRKSILKVRNEARQEVISLLAKLSSGWRQYPEERNIV VRHGTSSVLLEQYRVNDQLRLIWTVDIIKENSNHTQILKVWDVLPLPDLPKLPRRLDDVFGNYTVDKMNRCKHRCIEGNLVVPMRWPMDFDGAAARSIPE IDHVKLPSQPLSSLLVRTPQVKTRVPYRRLPEYIEKDDKRNLRISLFGWELICVYFLVFILIICVIRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65780			P-loop containing nucleoside t...		Potri.017G140601 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	1.41	0.9089
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	5.91	0.8924
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	6.00	0.8952
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	6.32	0.8948
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	7.34	0.8948
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	7.41	0.8844
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060200 [exp]	7.48	0.8696
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	9.00	0.8878
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	10.24	0.9020
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Potri.008G194100 [exp]	11.31	0.8423

Compare expression of checked genes

Potri.017G140601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.