Plant FIBer expression Database

Potri.017G140700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00680 634 / 0 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G113575
[exp]
627 / 0 ATCG00680 933 / 0.0 photosystem II reaction center protein B (.1)
Potri.011G074868
[exp]
625 / 0 ATCG00680 926 / 0.0 photosystem II reaction center protein B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006593
[exp]
283 / 4e-95 ATCG00680 352 / 1e-121 photosystem II reaction center protein B (.1)
Lus10006594
[exp]
277 / 2e-91 ATCG00680 544 / 0.0 photosystem II reaction center protein B (.1)
Lus10001686
[exp]
111 / 2e-30 ATCG00680 117 / 4e-33 photosystem II reaction center protein B (.1)
Lus10009726
[exp]
43 / 7e-05 AT4G37850 63 / 2e-12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00421 PSII Photosystem II protein
Representative CDS sequence
>Potri.017G140700.2 pacid=42814436 polypeptide=Potri.017G140700.2.p locus=Potri.017G140700 ID=Potri.017G140700.2.v4.1 annot-version=v4.1
ATGGGTTTGCCTTGGTATCGTGTTTATACCATCATATTGAATGATCCCGGTCCTTTGGTTGCTGGTTGGGCCGGCTCGATAGCTCTATATGAATTAGCAG
TTTTTTATCCTTCTGACCCCGTTCTCAATCCAATGTGGAGATATTGTATGTTCATTATACCCTTCATGACTCGTTTAGGAATAACCAATTCATGGGGTGG
TTGGAGTATTACAAGAGGAACTATAACAAATCCGGGAAAACCTTTTTTAGATTTGCCCAAGATCTTTGGAATTCATTTATTTCTCTCAGAAGTGGCTTGT
TTTAGGTTTGGTGCTTTACATGTAACAGGATTGTATGGTTTTGATCCTTTTATTCCGGGAGGAATAGCCTCTCATCATATTACAACAAGGACATTGGGCA
TATTGGCAGGCCTATTCCATCTTAGTGTCCGCCCACCCCAATGTCTATACAAAGGATTACGTATGGGAAATATTGAAACCGTGCTTTTCAGTAGTATCGT
TGTTGTCTTTTTTGCAGCTTTTGTTGTTGCTAGAACTATGTGGTATGCGGGTACCCCCATTGAGTTATTTGGTCCCACTCGTTATCAATGGGATCAAGGA
TACTTCCAGCAAAAAATATATCGAAGAGTTGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTACTATTACATCGGAAATAATCCTGCAAAGGGTGGAT
TGTTCAGAGCAGGTTCAATGGATAACGAGGATGGAATAACTATTGGGTGGTTAGGACATCCTATATTTAAAGATAAAGAAGGGCGTGAGCTTTTTGTACA
TCGTATGCCTACTTTTTTTAAAACATTTCCGGTTGTGTTTGAATTTAAGTATAGTGTTGAACAAGTAGGTGTAACTGTTGAGTTCTATGATGGTGAACTA
AATGGAATCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGCGCACAATTGGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCG
ATGGTGTTTTTCGTAGTAGTCCAAGGGGTTGGTTTACTTTTGAACATGCTTCGTTTGCCCTACTCTTCTTCTTCGGACACATTTGGCATGGCTCTCGAAC
CTTGTTCATAGATGTTTTTGTTGATATTGATCCAGATTTAGACGCTCAGGTGGAATTTGAAGCATTCCAAAAACTTAGAGATCCAACTACAAGAAGACAA
GTAGTTTGA
AA sequence
>Potri.017G140700.2 pacid=42814436 polypeptide=Potri.017G140700.2.p locus=Potri.017G140700 ID=Potri.017G140700.2.v4.1 annot-version=v4.1
MGLPWYRVYTIILNDPGPLVAGWAGSIALYELAVFYPSDPVLNPMWRYCMFIIPFMTRLGITNSWGGWSITRGTITNPGKPFLDLPKIFGIHLFLSEVAC
FRFGALHVTGLYGFDPFIPGGIASHHITTRTLGILAGLFHLSVRPPQCLYKGLRMGNIETVLFSSIVVVFFAAFVVARTMWYAGTPIELFGPTRYQWDQG
YFQQKIYRRVAWSKIPEKLAFYYYIGNNPAKGGLFRAGSMDNEDGITIGWLGHPIFKDKEGRELFVHRMPTFFKTFPVVFEFKYSVEQVGVTVEFYDGEL
NGISYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFEHASFALLFFFGHIWHGSRTLFIDVFVDIDPDLDAQVEFEAFQKLRDPTTRRQ
VV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.017G140700
[exp]
0 1
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.019G028300
[exp]
2.44 0.9159
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.011G074826
[exp]
2.82 0.8752
ATCG00490 ATCG00490.1, RB... ribulose-bisphosphate carboxyl... Potri.013G162700
[exp]
3.74 0.8915
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.011G113800
[exp]
4.47 0.8974
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.019G028351
[exp]
5.47 0.8948
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G062582
[exp]
8.83 0.8920
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.007G061621
[exp]
12.84 0.8438
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.004G128501
[exp]
15.09 0.8437
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.011G074700
[exp]
15.16 0.8549
Potri.011G074100
[exp]
19.97 0.8069

Potri.017G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.