Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37020 1049 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 717 / 0 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 503 / 3e-163 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 481 / 3e-157 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G20730 480 / 7e-154 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G62000 393 / 7e-124 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 372 / 6e-118 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 372 / 1e-116 ARF ARF4 auxin response factor 4 (.1) AT3G61830 358 / 2e-113 ARF ARF18 auxin response factor 18 (.1) AT2G46530 355 / 2e-112 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078200 [exp] 1403 / 0 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 724 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 717 / 0 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 712 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 707 / 0 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.006G077800 [exp] 525 / 2e-171 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 521 / 2e-169 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 514 / 1e-167 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 506 / 2e-166 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007386 [exp] 1116 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 1071 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 1063 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 999 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 715 / 0 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 711 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 697 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10017640 [exp] 680 / 0 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 518 / 3e-169 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 491 / 2e-163 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.017G141000.1 pacid=42813837 polypeptide=Potri.017G141000.1.p locus=Potri.017G141000 ID=Potri.017G141000.1.v4.1 annot-version=v4.1 ATGAAGCTTTCAACATCAGGGTTGGGTGGTCAGCAAGCGGGTCAAGAAGGGGAGAAGAAATGTTTAAATTCAGAGTTGTGGCATGCTTGTGCTGGACCAC TGGTGTCCCTACCAACTATGGGGAGCAGAGTGGTCTACTTCCCTCAGGGTCACAGTGAGCAGGTAGCTGCAACTACTAACAAAGAAGTTGATGCACACAT ACCAAATTATCCCAGCTTGCCGCCCCAGTTGATATGCCAGCTCCACAATGTCACTATGCATGCAGATGTTGAAACAGACGAAGTTTATGCCCAGATGACA TTACAGCCTTTGACGCCACAAGAGCAAAAGGAGACTTTTCTTCCCTTGGACTTGGGAATGCCAAGCAAGCAGCCCACAAATTATTTTTGCAAGACATTGA CTGCAAGTGATACTAGCACACATGGAGGATTTTCTGTTCCTCGTCGCGCTGCTGAAAAAGTCTTTCCTCCCCTGGATTTCACCCAGCAGCCTCCAGCTCA GGAACTTATCGCTAGGGATCTCCATGATGTTGAATGGAAGTTTCGGCATATTTTCCGAGGACAGCCCAAACGGCATCTACTTACGACAGGTTGGAGTGTG TTTGTAAGTGCCAAAAGACTTGTTGCTGGAGATTCTGTTCTTTTTATCTGGAATGAGAAAAACCAGCTTCTTTTGGGAATTCGCCGTGCCACTCGACCGC AAACTGTAATGCCATCATCTGTGTTATCTAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCTGCTCATGCTGCTGCGACTAATAGCTGTTTCACAGT GTTCTATAACCCAAGGGCTAGTCCATCTGAGTTTGTTATACCTCTATCCAAATATGTTAAAGCAGTTTTTCACATACGTGTTTCAGTTGGAATGCGCTTC CGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGTAGGTACATGGGAACGATAACTGGCACAAGTGATCTAGATCCTGTTCGCTGGCCTAATTCACATT GGCGATCTGTCAAGGTTGGTTGGGATGAGTCCACAGCAGGTGAGAGGCAGCCAAGGGTGTCTTTATGGGAGATTGAACCTTTAACCAGTTTTCCCATGTA TCCATCACTATTTCCCCTCCGACTGAAACGGCCTTGGCATCCTGGGTCCTCATCTTTGCTTGATAGCAGAGATGAAGCAAGTAATGGCTTAATATGGCTA AGGGGTGGAAGTGGAGAACAAGGTCTTCCATCTCTGAATTTTCAAGCTAATATGCTCCCCTGGATGCAGCAGAGGCTAGATCCAACGATGCTGGGAAATG ATCATAATCAGCAGTACCAGGCCATGTTGGCGGCTGGTATGCAAAACCTGGGAGGTGGAGATCCCTTGAGGCAGCAATTTATGCAGCTTCAGCAGCCTTT TCAATACCCCCAACAGTCTAGCAGCCCCAATCCTCTGTTGCAGCTGCAGCAGCAACATCAAGCAATGCTACAATCCATCCCTCATAATATTCTGCAACCA CAAAACCAAATTTCTTCGGACAGCTTGCCCCGTCACCTCCTACAGCAGCAACTCAACAATCAGCCAGATGATCAGGCTCAGCAACACCAACATGCCTATC ATGATGGACTGCACATTCAAACTGATCTACTCCAGAGACAACAGTCAAATTTGCCTTCTCCATCATTTTCAAAAACAGAATACATGGACTCAAGCCCAAA GTTCACAGTATCTACTACCCCAATGCAAAACATACTAGGTTCTTTGTGTACTGAAGGGAGCGGTAATCTTCTGGACTTCACCAGAGCTGGTCAGTCCACA CTAACTGAACAGTTACCCCAACAGTCCTGGGTCCCAAAGTATGCACATCATGATGTCAATGCTTTTTCTAATTCACTCTCTCTCCCACGAACCTACCCTG AGAAAGATCTTTCAGTGGAAGCAGAAAACTGTAATTCTGATGCCCAGAATCCTACTTTCTTTGGACTCCTGCTACCTACCACGGTGCCCAGATACCCTAC TTCAACAGTTGATACTGATGTCTCCTCAATGCCATTAGGGGATTCTGGGTTCCAGAATTCTCTGTATGGTTGTGTGCAAGACTCTTCTGAGTTATTGCCA AATGCAGGACAGATGGACCCACCAACCCCAAGTCGAACATTTGTCAAGGTCTACAAATCAGGATCGGTTGGGCGCTCATTGGACATATCCCGGTTCAGCA GCTATCATGAGCTGCGAGAAGAACTGGCTCAGATGTTTGGAATTGAGGGGAAATTGGAAAACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAG GGAGAATGATGTACTTCTCCTTGGAGATGATCCCTGGGAGTTATTTGTGAACAATGTTTGGTATATAAAGATACTTTCTCCGGAGGACGTTTTAAAAATG GGAGAGCAGGGTTTTGAATCCTCTGGCCCAAATGCTGTCAAAGGATGA
AA sequence Show only first row Show all	>Potri.017G141000.1 pacid=42813837 polypeptide=Potri.017G141000.1.p locus=Potri.017G141000 ID=Potri.017G141000.1.v4.1 annot-version=v4.1 MKLSTSGLGGQQAGQEGEKKCLNSELWHACAGPLVSLPTMGSRVVYFPQGHSEQVAATTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMT LQPLTPQEQKETFLPLDLGMPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV FVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFHIRVSVGMRF RMLFETEESSVRRYMGTITGTSDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTSFPMYPSLFPLRLKRPWHPGSSSLLDSRDEASNGLIWL RGGSGEQGLPSLNFQANMLPWMQQRLDPTMLGNDHNQQYQAMLAAGMQNLGGGDPLRQQFMQLQQPFQYPQQSSSPNPLLQLQQQHQAMLQSIPHNILQP QNQISSDSLPRHLLQQQLNNQPDDQAQQHQHAYHDGLHIQTDLLQRQQSNLPSPSFSKTEYMDSSPKFTVSTTPMQNILGSLCTEGSGNLLDFTRAGQST LTEQLPQQSWVPKYAHHDVNAFSNSLSLPRTYPEKDLSVEAENCNSDAQNPTFFGLLLPTTVPRYPTSTVDTDVSSMPLGDSGFQNSLYGCVQDSSELLP NAGQMDPPTPSRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLENPHRSGWQLVFVDRENDVLLLGDDPWELFVNNVWYIKILSPEDVLKM GEQGFESSGPNAVKG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	3.46	0.8599
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	4.24	0.8843
AT2G29080		FTSH3	FTSH protease 3 (.1)		Potri.016G099800 [exp]	7.41	0.8322
AT4G19160			unknown protein		Potri.003G033300 [exp]	7.48	0.8346
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	10.19	0.8096
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.004G212700 [exp]	12.04	0.8043
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.006G003000 [exp]	20.34	0.7959
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	20.66	0.8371
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	24.26	0.8035
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.010G122200 [exp]	24.79	0.7995

Compare expression of checked genes

Potri.017G141000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.