Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 408 / 5e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 394 / 6e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 384 / 2e-126 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 378 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 369 / 6e-122 MEF21 mitochondrial editing factor 21 (.1) AT5G59200 361 / 8e-119 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 360 / 3e-116 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 357 / 1e-115 SLO1 SLOW GROWTH 1 (.1) AT5G56310 352 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 356 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 427 / 1e-143 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 396 / 7e-131 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 392 / 5e-130 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 388 / 3e-128 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 383 / 3e-127 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.008G106500 [exp] 384 / 6e-127 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 382 / 2e-124 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 372 / 3e-123 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G011000 [exp] 378 / 2e-122 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014298 [exp] 418 / 9e-140 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 417 / 4e-139 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 409 / 2e-136 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 383 / 5e-128 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10031423 [exp] 380 / 1e-124 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 376 / 4e-123 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 378 / 7e-123 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 370 / 7e-120 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 360 / 5e-119 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 359 / 3e-117 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G141200.1 pacid=42812935 polypeptide=Potri.017G141200.1.p locus=Potri.017G141200 ID=Potri.017G141200.1.v4.1 annot-version=v4.1 ATGTCAGCTTCCAGATATTTGAAAGCAAGCAAGAAAACCATCTCCCTCTTAGACCAAAAAGGCCTAACCATCTCACAGTTGAAGCAAATTCAATCCCATC TCACTGTCACAGCCACCCTTAAAGATCCATATGCAGCAGCAAAAATTATCTCTCTCCATGCACATTCCAATGCCAGAAGCTCTCTCTTTTATGCTGAAAG ACTCTTTCTTTGCCTTCAAAACAAGTCCACCTTCATCTGGAACACCATGATGCAAGCTTTTGTAGAAAAAAATGAGGCCGTCAGAGCCTTTTCTCTATAT AAGCACATGCTAGAGAGTAATTACTTGCCTAATAACTTTACTTTCTCTTTTGTTATCAGGGCTTGTATTGATGTTTTTAATTTGCAAATGGGTTTATGTT TTCATGGCCAAGTTGTTAAATTTGGATGGGAAAGTTATGATTTTGTGCAAAATGGATTGATTCATTTGTATGCAAATTGTGGGTTTATGGACTTGGCTAG GAACATGTTTGATATGAGTATAAAGAGGGATGTTGTTACTTGGACTTGTTTGATTAGTGGGTATTTAAATTCCGGTCAAGTCTTGATTGCTAGGGAGTTG TTTGATAGAATGCCTGAGAAGAATCCGGTTTCGTGGGGTGCCTTGATCGCAGGGTATGTGCGAATTGGGTTTTTTAAGGAGGCTTTAGAGGTTTTCTATG ATATGCAGGTTTCTGGGTTTAGGCTTAATCGTGCTAGCATTGTTGGTGCTCTTACGGCTTGTGCTTTCTTAGGGGCTTTGGATCAAGGAAGGTGGATACA TGCTTATGTTAAGAGGCATCATATGTCATTGGATAGAATGCTTGGCACTGCGCTAATTGATATGTATGCAAAGTGTGGATGTATCGAAATGGCTTGTAGC GTGTTTGATGAGATGGATGATAGGGATGTCTATGCTTTTACTTGTTTGATTTCGGGTCTAGCTAATCATGATAAGAGTGAAGCTGCCATTGATTTGTTTA ACAGGATGCAGGATGAGGGAGTTGTGCCGAACGAGGTCACATTCGTATGTGTCCTAAATGCTTGTAGCCGTATGGGAATGGTTGATGAAGGGTTGAGAAT ATTCGAGAGCATGAGTAATAGATATGTCATTGAGCCACAAATCCAGCATTATGGCTGTTTGGTGGATCTTTTGGGGAGAGCTGGGAAGATAGAGGAAGCA AAGCAGGTGGTGAGAGAGATGCCACTGCAGCCAGATTCATATACCTTGGGTGCATTGCTAGATGCATGTAGAGTACATGGTGATGTCCAGTTGGGTGAAG AAATGGTTGATAGGTTGGTGCAGCGGTGTCTTGACCATGGTGGTGTACATGTTCTTCTTTCAAACATGTATGCCTCCGCTGACAAATGGGAGGATGTCTC AAAGATAAGGAAGAAGATGGAAGATAAAAACATAAGAAAGTTGCCAGGTTGTAGTTCAATTGAAGTGAATGGTACTGTTTGTGAATTTGTCACTGGAGAT AGGTCCTATGCACTTGAGGAAGATATCATGTTCTTGCTGTTTGGAATTGACAAGCAGTTAAAGTCTCTTTTTCTTGATGATGATGAGCATTATAACGTAA CCATGGAACAAGTTCCCTCGTAG
AA sequence Show only first row Show all	>Potri.017G141200.1 pacid=42812935 polypeptide=Potri.017G141200.1.p locus=Potri.017G141200 ID=Potri.017G141200.1.v4.1 annot-version=v4.1 MSASRYLKASKKTISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLY KHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIAREL FDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACS VFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEA KQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDRLVQRCLDHGGVHVLLSNMYASADKWEDVSKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVTGD RSYALEEDIMFLLFGIDKQLKSLFLDDDEHYNVTMEQVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	0	1
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	1.41	0.9373
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	2.00	0.9191
AT2G44850			unknown protein		Potri.002G137300 [exp]	3.00	0.9018
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.015G090500 [exp]	4.12	0.8423	HAG905
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	4.24	0.8748
AT3G10350			P-loop containing nucleoside t...		Potri.008G037100 [exp]	7.21	0.8859
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	7.34	0.8622
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	8.94	0.8781
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	9.53	0.8748
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	11.48	0.8524

Compare expression of checked genes

Potri.017G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.