Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40380 390 / 5e-127 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 382 / 3e-124 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G70520 374 / 6e-121 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G19090 308 / 3e-96 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G56120 314 / 2e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 312 / 9e-94 Leucine-rich repeat transmembrane protein kinase (.1) AT1G16670 295 / 2e-93 Protein kinase superfamily protein (.1) AT1G56140 310 / 4e-93 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 310 / 5e-93 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G21410 298 / 1e-91 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141300 [exp] 1160 / 0 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 780 / 0 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043900 [exp] 405 / 8e-133 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.010G043800 [exp] 395 / 6e-129 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 392 / 9e-128 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 377 / 5e-122 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.001G348000 [exp] 371 / 1e-119 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 359 / 1e-114 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.018G132900 [exp] 331 / 4e-107 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010960 [exp] 778 / 0 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 400 / 9e-131 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10009703 [exp] 395 / 9e-129 AT1G70520 319 / 4e-100 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 388 / 5e-126 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 377 / 3e-122 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 369 / 1e-118 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010927 [exp] 320 / 1e-101 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10018382 [exp] 323 / 3e-101 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10020688 [exp] 313 / 2e-100 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 306 / 2e-98 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.017G141400.3 pacid=42813386 polypeptide=Potri.017G141400.3.p locus=Potri.017G141400 ID=Potri.017G141400.3.v4.1 annot-version=v4.1 ATGTTATGTATCCTATTTGATATTGATTTTGTCAGTCAATTAATGAACACAAAGATGGAGGCCAGGAATTGCATGTTTAATGCAGTAGTAGTAATTACAT GGTGTTTTATGCTGAAAGTGGGAGTATCAGACCCAGGAATCAATATGCTAAGCCAAGGTTGTAGCACTTATAATGTTAGCAGCGTGCCGAATTTCAACAG CAACCTGAACATAACCTTCGGGTTAGTCAGGACTGACTTGATGAACAGCAGCAAAAAATTTGTAACCGAGCAGAGTTTGAGTGGTCCAGACTCAGTTTAT GCCATGTTTCAGTGCAGAGATTATATGTCTGCAGCTGATTGCATTGCTTGTTTTTCTGCTGCTTCGACGCAGATTCGCAACTGCTCTGTGGCCAATGGTG CTCGTGTTGTCTATGATGGATGTTTCCTCAGGTATGAGAGGAGCGATTTCTATGGGGAGACCACTCGGGATGCCAATCGCGAGTATTGCGGGAATCAAAC TACATCATCACCAGATACTACTTTTAACACAACTGTGGCAGGCCTATTAGGCGATCTTCAAGTGGCGACACCAAGGATAGATGGTTTCTTTGCTGCTAGC AAGAGGGAAGTGGCAGGTTCAAATGTATCGGTGTATGGCATTGCACAATGTGCGCAAACTATTGATTCGGCTGGTTGCCAAGCTTGTATGGAAGTTGCCT ATAAAAACATACAGAGGTGTCCTCCAAATGCGGATGGTAGGGCACTTGATTCAGGATGTTTTATGAGATACTCGGACAAACCCTTCTTTGCTGATAACCA GACTATCGATCTCCTGCCTTTCTTGAAAACTAAAAGTTCATCAAGCTCCAAAAAAGGCGCGATTATCGGGGGTGCAGCTGGAGGGGGAGCCCTTGTTTTG CTTATTGTTGGATTGTTTATTTGGTTTAAACTATCTAAGAAGCGGAAGGCAGCTCCTAGAGGTAATATATTAGATGCAACCGAGCTGCGAGGCGCCACCA TATACAGTTATAAGGACTTGAAATCGGCAACAAAAAATTTTAAAGAAGAAAACAAGCTAGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTTTGAA GAATGGGAAAGTAGTTGCAGTAAAGAAACTAGCTCTAGGCCAGTCCAACAGGGTCAAAGCAGATTTTGCAAGTGAAGTCACACTGATAAGCAATGTTCAT CACCGGAATCTTATTCGTCTACTCGGCTGTTGTAGCAAAGGACCAGAGCTACTTCTTGTATATGAATACATGGCAAACAGCAGCCTTGATAGATTCTTAT TTGGTGAAAAACGAGGATCCCTCAGATGGAAGCAACGATTTGATATAATCCTCGGCACAGCTCAAGGGCTCGCCTATCTGCATGAGCAATTCCATGTGTG CATCATTCATAGAGATATAAAATCCAGCAACATTCTCCTGGATGACGATTTCCAACCCAAGATAGCAGATTTTGGGTTGGCAAGGCTTCTACCTGAAAAT CAGAGCCACCTTAGCACAAAATTTGCCGGAACATTGGGATACACAGCACCTGAGTATGCTCTCCATGGACAGCTATCGGAAAAAGTTGACACATACAGCT TTGGCATCGTTGTCCTTGAAATCGTAAGTGGCACGAAGAGCAGTGAGATGATAGCTGATCCTGGTGCTGAATACCTCCTCAAAAAGGCATGGAAGCTATA TGAGGATGGCACGCACCTTGAATTGGTGGATGAAAGCTTAGATCCCAGTGAATATGAAGCGGAGCATGCAAAGAAAATCATAGAGATTGCCTTGATGTGC ACCCAATCATCACCAACTTCAAGGCCAACAATGTCCGAGGTAGCTGTTTTGTTCAAAAGTAGGGGTTCACTGGAGCACACGCAACCAACTAGACCTCCCT TTGTTGAATCTGCTGAAAGGTTCCACGGAGACAAGTCAACTTCTACTGCCTCCTCCTCATCCAATGCCACTGCTTCTTTCTCTGTGTTGTCTGCACGTTG A
AA sequence Show only first row Show all	>Potri.017G141400.3 pacid=42813386 polypeptide=Potri.017G141400.3.p locus=Potri.017G141400 ID=Potri.017G141400.3.v4.1 annot-version=v4.1 MLCILFDIDFVSQLMNTKMEARNCMFNAVVVITWCFMLKVGVSDPGINMLSQGCSTYNVSSVPNFNSNLNITFGLVRTDLMNSSKKFVTEQSLSGPDSVY AMFQCRDYMSAADCIACFSAASTQIRNCSVANGARVVYDGCFLRYERSDFYGETTRDANREYCGNQTTSSPDTTFNTTVAGLLGDLQVATPRIDGFFAAS KREVAGSNVSVYGIAQCAQTIDSAGCQACMEVAYKNIQRCPPNADGRALDSGCFMRYSDKPFFADNQTIDLLPFLKTKSSSSSKKGAIIGGAAGGGALVL LIVGLFIWFKLSKKRKAAPRGNILDATELRGATIYSYKDLKSATKNFKEENKLGEGGFGDVYKGTLKNGKVVAVKKLALGQSNRVKADFASEVTLISNVH HRNLIRLLGCCSKGPELLLVYEYMANSSLDRFLFGEKRGSLRWKQRFDIILGTAQGLAYLHEQFHVCIIHRDIKSSNILLDDDFQPKIADFGLARLLPEN QSHLSTKFAGTLGYTAPEYALHGQLSEKVDTYSFGIVVLEIVSGTKSSEMIADPGAEYLLKKAWKLYEDGTHLELVDESLDPSEYEAEHAKKIIEIALMC TQSSPTSRPTMSEVAVLFKSRGSLEHTQPTRPPFVESAERFHGDKSTSTASSSSNATASFSVLSAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141400 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.004G101400 [exp]	1.41	0.9480
AT3G14840			Leucine-rich repeat transmembr...		Potri.019G008900 [exp]	1.73	0.9347
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141300 [exp]	2.23	0.9298
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	3.46	0.9199
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	5.83	0.9391
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	13.49	0.9165
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G145516 [exp]	13.74	0.9142
AT4G05030			Copper transport protein famil...		Potri.001G468500 [exp]	14.96	0.9050
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.001G063909 [exp]	20.00	0.9029
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	24.49	0.9075

Compare expression of checked genes

Potri.017G141400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.