Plant FIBer expression Database

Potri.017G141600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02260 570 / 0 Divalent ion symporter (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G141800
[exp]
813 / 0 AT1G02260 538 / 0.0 Divalent ion symporter (.1)
Potri.015G146900
[exp]
603 / 0 AT1G02260 647 / 0.0 Divalent ion symporter (.1)
Potri.012G144000
[exp]
508 / 6e-177 AT1G02260 582 / 0.0 Divalent ion symporter (.1)
Potri.017G141950
[exp]
361 / 4e-123 AT1G02260 263 / 2e-85 Divalent ion symporter (.1)
Potri.017G141700
[exp]
150 / 9e-44 AT1G02260 140 / 7e-41 Divalent ion symporter (.1)
Potri.017G141650
[exp]
79 / 2e-18 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039251
[exp]
584 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
Lus10027497
[exp]
576 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03605 DcuA_DcuB Anaerobic c4-dicarboxylate membrane transporter
Representative CDS sequence
>Potri.017G141600.3 pacid=42813686 polypeptide=Potri.017G141600.3.p locus=Potri.017G141600 ID=Potri.017G141600.3.v4.1 annot-version=v4.1
ATGGCTCTGGGTCCGATTAAGAAGGTTGTCTTAGGTTCACTTGCCTTCGCTGTCTTTTGGATTTTGGCAGTTTTCCCAGCAGTTCCTTTCTTACCCATTG
GAAGGACAGCAGGTTCCATCCTCGGGGCAATGCTTATGGTTATCTTCAAAGTCATCACCCCTAAGGAAGCATATTCTGCCATCAACCTCCCTGTACTGGG
CCTTCTCTTTGGAACCATGGTTGTAAGCATCTATCTTGAAAGAGCAGACATGTTCAAGCACTTGAGAGTCTTGCTCTCATGGAAGAGTTGGGGTGCGAAG
GACATGCTCTGCCGGATCTGCATTGTTTCTGCTATTTCAAGTGCTCTGTTCACTAATGACACCACCTGTGTCATTCTCACTGAATTCATATTAAAGATTG
CTAGAGAAAACAATATTCGACCCGAACCTTTCTTGCTTGGGCTGGCTTCAAGTTCGAATATTGGATCCTCTGCAACTCCAATCGGCAACCCTCAAAACTT
GATAATTGCTATTCAAAGTGGCATCTCTTTTGGGGAATTCGTATTGGGACTTCTTCCCGCGGTGCTTTTGGGCGTCTTTGTAAATGCTTTAATTCTTTTA
TGCATGTTTTGGAGGTTGTTATCTGATGTTGAGAAAGATTCAGATGTCCATCAGATTTCGCTTGCTACCATGTCATCTCCCAAATCTTTGGAATCTCACG
AATGTGATCCCATTACAGAACATGTGACCTCCCAGAGTTCCCCTGTTATAAACAGGGATGGAGGTCATTCCAAGAATCTTAAAAACAGGTTGAGTGAATT
GGATATGTGCAGTGATTCCTGTGGTGAAATTGAGCTGAAGAAACCAGTCCTTTCAAAGAAGGAGGCAACTGATAATACGCTTTCTGAAATAGGAGAGCAA
AAGGAGGAAAGATTTGCAAGGGGTGGAGTACAAGGGACAATGGAGATGACGACTGATTTAGAGTCCGGGCCGCAACAGTCCACCGAAGAAAGTAAAGGCC
AGCTGAATAGATGGAAGAGATTGTCATGGAAGTTGTGTATTTACCTTGGTACTATTGGAATGCTGGTTGCTTTTCTAATGGGTTTGGACATGTCTTGGAC
TGCACTCACAACAGCCCTCATTTTTGTGATTCTTGATTTCAAAGATGCAGGGCCTTGCCTAGAGAAGGTTTCATACTCTCTTCTGGTATTCTTTTGTGGA
ATGTTTATCACGGTTGATGGCTTCAATAAAACAGGAATTCCTGGCAGTCTCTGGAGCTTGATGGAGCCTCATGCACGGATCGATCATGCTAGTGGGATTG
CTGTGCTGGCCATTGTAATACTTCTTCTCTCAAATGTTGCTTCGAATGTACCAACTGTTCTTTTGCTTGGAGCAAAGGTAGCTACTTCTGCCGCTGCAAT
ATCTCCGAGTAAAGAGAAGAAAGCTTGGCTCATCCTGGCATGGGTTAGCACAGTTGCTGGAAACCTTTCACTATTGGGTTCTGCTGCAAACCTAATTGTG
TGTGAACAAGCTCTTCGTGCCCAGCCTAGTTACAATATCACCTTTTGGAGCCATTTGAAATTTGGTGTTCCATCCACACTTATTGTCACTACTATTGGCT
TAACTCTTATATATTGCTATGATGTTTGA
AA sequence
>Potri.017G141600.3 pacid=42813686 polypeptide=Potri.017G141600.3.p locus=Potri.017G141600 ID=Potri.017G141600.3.v4.1 annot-version=v4.1
MALGPIKKVVLGSLAFAVFWILAVFPAVPFLPIGRTAGSILGAMLMVIFKVITPKEAYSAINLPVLGLLFGTMVVSIYLERADMFKHLRVLLSWKSWGAK
DMLCRICIVSAISSALFTNDTTCVILTEFILKIARENNIRPEPFLLGLASSSNIGSSATPIGNPQNLIIAIQSGISFGEFVLGLLPAVLLGVFVNALILL
CMFWRLLSDVEKDSDVHQISLATMSSPKSLESHECDPITEHVTSQSSPVINRDGGHSKNLKNRLSELDMCSDSCGEIELKKPVLSKKEATDNTLSEIGEQ
KEERFARGGVQGTMEMTTDLESGPQQSTEESKGQLNRWKRLSWKLCIYLGTIGMLVAFLMGLDMSWTALTTALIFVILDFKDAGPCLEKVSYSLLVFFCG
MFITVDGFNKTGIPGSLWSLMEPHARIDHASGIAVLAIVILLLSNVASNVPTVLLLGAKVATSAAAISPSKEKKAWLILAWVSTVAGNLSLLGSAANLIV
CEQALRAQPSYNITFWSHLKFGVPSTLIVTTIGLTLIYCYDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02260 Divalent ion symporter (.1) Potri.017G141600
[exp]
0 1
AT1G02260 Divalent ion symporter (.1) Potri.017G141650
[exp]
1.00 0.9806
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.017G151800
[exp]
4.00 0.9490
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.017G151232
[exp]
7.74 0.9343
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.016G021700
[exp]
9.38 0.8865
AT5G50900 ARM repeat superfamily protein... Potri.015G103700
[exp]
10.39 0.8813
AT4G10770 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.007G056900
[exp]
10.95 0.8875
AT3G08870 Concanavalin A-like lectin pro... Potri.006G103200
[exp]
11.53 0.9223
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.016G021200
[exp]
14.00 0.8827
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.002G230000
[exp]
17.88 0.9180 Pt-GLUR3.3
AT4G25640 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, ... Potri.015G147600
[exp]
18.33 0.9185

Potri.017G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.