Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02260 538 / 0 Divalent ion symporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141600 [exp] 815 / 0 AT1G02260 569 / 0.0 Divalent ion symporter (.1) Potri.015G146900 [exp] 559 / 0 AT1G02260 647 / 0.0 Divalent ion symporter (.1) Potri.012G144000 [exp] 496 / 2e-172 AT1G02260 582 / 0.0 Divalent ion symporter (.1) Potri.017G141950 [exp] 331 / 2e-111 AT1G02260 263 / 2e-85 Divalent ion symporter (.1) Potri.017G141700 [exp] 152 / 2e-44 AT1G02260 140 / 7e-41 Divalent ion symporter (.1) Potri.017G141650 [exp] 66 / 2e-13 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039251 [exp] 533 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1) Lus10027497 [exp] 533 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03605 [poplar] [flax] DcuA_DcuB Anaerobic c4-dicarboxylate membrane transporter
Representative CDS sequence Show only first row Show all	>Potri.017G141800.2 pacid=42814450 polypeptide=Potri.017G141800.2.p locus=Potri.017G141800 ID=Potri.017G141800.2.v4.1 annot-version=v4.1 ATGGATCTGGGTCCGTTTAAGAAGGTTGTCTTAGGTTCAGTTGCCTTCGCAATCTTTTGGATTTTGGCAGTTTTCCCAGCAGTTCCTTTCTTACCCATTG GAAGGACAGCAGGTTCCATCCTCGGGGCAACTCTTATGGTTATCTTCAAAGTCATCACCCCTAAGCAAGCATATGATGCCATCAACCTCCCTGTACTGGG CCTTCTCTTTGGAACCATGGTTGTAAGCATCTATCTTGAAAGAGCAGACATGTTCAAGCACTTGGGAGTCTTGCTCTCATGGAAGAGTCGGGGTGCGAAG GACATGCTCTGCCGGATCTGCATTGTTTCTGCCATTTCAAGTGCTCTGTTCACTAATGACACCGCATGTTTCTTTCTCACTGAGTTCATATTAAAGATTG CTAGACAAAACAATATTCGACCCGAACCTTTCTTGCTTGGGTTGGCTTCAAGTTCGAATATTGGATCCTCTGCAACTCCAATCGGCAACCCTCAAAACTT GATAATTGCTATTCATAGTCGCATCTCTTTTGGGGAATTCGTATTGGGACTTCTTCCCGCGGTGCTTGTGGGTGTCTTTGTGAATGCTTTAATTCTTATA TGCATGTTTCGGAGGTTGTTATCTGATGTTAAGGAAGAAGAAGATGCTTTGTATGAAATGATTGTTCAGGAAGATTCAGCTGTCCATCAGATTTCGCTTG CTACCATGTCATCTCCCAATTCTTTGGAATATCACGAATATGATCCCATTGCAGAACATGTGAACGCCCAGAGGATGTGTGAATTGGATATGTGCAGTGA TTCCTGTGGTGAAATTGAGCTGATGAAAGCAGTCCTTTCAAAGAAGGAGGCAACTGATAATATGTTTTCTGAAATAGGAGAGCCAATGGAGGAAAGATTT GCAAGGGGTGGAGTACAAGGGACCATGGACATGATGACTGATTTAGAGCCCGGGCCGCAACAGTCCGCTGAAGAAAGTAAAGGCCAGCTGAATAGATGGA AGAGATTGTGTATTTACCTTGGTACTGTTGGAATGCTGGTTGCTTTTCTAATGGGTTTGGACATGTCTTGGACTGCACTCACAGCAGCCCTCATTTTTGT GATTCTTGATTTCAAAGATGCAGGGCCTTGCCTAGAGAAGGTAAATCAACAGGTTTCATACTCTCTTCTGGTATTCTTTTGTGGAATGTTTATCACGGTT GATGGCTTCAGTAAAACAGGAATTCCTACCAGTTTCTGGACCTTGATGGAGCCTCATGCACAGATCGATCATGCTAGTGGGATTGCTGTGCTGGCCATTG TAATACTTGTTCTCTCAAATGTTGTTTCGAATGTACCAACTGTTCTTTTGCTTGGAGCAAAGGTAGCTGCTTGTGCCGCTGCAATATCTCCTAGTAAAGA GAAGAAAGCTTGGCTCATCCTGGCATGGGTTAGCACAGTTGCTGGAAACCTCTCGCTATTGGGTTCTGCTGCAAACATAATTGTGTGTGAACAAGCTTTT CGTGCCCAGCCTAGTTACAATATCACCTTTTGGAGCCATTTGAAGTTTGGTGTTCCATCCACGCTTATTGTCACTACTATTGGCTTAGCTCTTGTATTGG CTTAG
AA sequence Show only first row Show all	>Potri.017G141800.2 pacid=42814450 polypeptide=Potri.017G141800.2.p locus=Potri.017G141800 ID=Potri.017G141800.2.v4.1 annot-version=v4.1 MDLGPFKKVVLGSVAFAIFWILAVFPAVPFLPIGRTAGSILGATLMVIFKVITPKQAYDAINLPVLGLLFGTMVVSIYLERADMFKHLGVLLSWKSRGAK DMLCRICIVSAISSALFTNDTACFFLTEFILKIARQNNIRPEPFLLGLASSSNIGSSATPIGNPQNLIIAIHSRISFGEFVLGLLPAVLVGVFVNALILI CMFRRLLSDVKEEEDALYEMIVQEDSAVHQISLATMSSPNSLEYHEYDPIAEHVNAQRMCELDMCSDSCGEIELMKAVLSKKEATDNMFSEIGEPMEERF ARGGVQGTMDMMTDLEPGPQQSAEESKGQLNRWKRLCIYLGTVGMLVAFLMGLDMSWTALTAALIFVILDFKDAGPCLEKVNQQVSYSLLVFFCGMFITV DGFSKTGIPTSFWTLMEPHAQIDHASGIAVLAIVILVLSNVVSNVPTVLLLGAKVAACAAAISPSKEKKAWLILAWVSTVAGNLSLLGSAANIIVCEQAF RAQPSYNITFWSHLKFGVPSTLIVTTIGLALVLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017100 [exp]	1.41	0.9663
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Potri.012G090000 [exp]	2.64	0.9532	CYP71AP2v1
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.010G236100 [exp]	2.82	0.9596
AT4G27680			P-loop containing nucleoside t...		Potri.011G055212 [exp]	5.65	0.9372
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	6.63	0.9551
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	7.74	0.9577
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	8.36	0.9544
AT5G05340			Peroxidase superfamily protein...		Potri.013G156400 [exp]	10.95	0.9414
AT3G52070			unknown protein		Potri.009G059100 [exp]	11.48	0.9406
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	11.61	0.9455

Compare expression of checked genes

Potri.017G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.