Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02260 263 / 2e-85 Divalent ion symporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141600 [exp] 382 / 9e-132 AT1G02260 569 / 0.0 Divalent ion symporter (.1) Potri.017G141800 [exp] 348 / 2e-118 AT1G02260 538 / 0.0 Divalent ion symporter (.1) Potri.015G146900 [exp] 269 / 1e-87 AT1G02260 647 / 0.0 Divalent ion symporter (.1) Potri.012G144000 [exp] 261 / 1e-84 AT1G02260 582 / 0.0 Divalent ion symporter (.1) Potri.017G141650 [exp] 75 / 1e-17 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039251 [exp] 276 / 9e-91 AT1G02260 719 / 0.0 Divalent ion symporter (.1) Lus10027497 [exp] 275 / 5e-90 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03600 [poplar] [flax] CitMHS Citrate transporter
Representative CDS sequence Show only first row Show all	>Potri.017G141950.1 pacid=42813301 polypeptide=Potri.017G141950.1.p locus=Potri.017G141950 ID=Potri.017G141950.1.v4.1 annot-version=v4.1 ATGTTTTGGAGGTTGTTATCTGATGTTAAGGAAGAAGAAGATGCTTTGTATGAAATGATTGTTCAGGAAGATTCAGAGTCCGGGCCGCAACAGTCCACTG AAGAAAGTAAAGGCCTGCTGAATAGATGGAAGAGATTGTGTATTTACCTTGGTACTGTTGGAATGCTGGTTGCTTTTATAATGGGTTTGGACATGTCTTG GACTGCACTCACAGCAGCCCTCAGTTTTGCGATTCTTGATTTCGAAGATGCAGGGCCTTGCCTACAGAAGGTTTCATACTCTCTTCTGGTATTCTTTTGT GGAATGTTTATCACGGTTGAGGGCTTCAATAGAACTGGAATTCCTAGCAGTCTCTGGAGCTTGATGGAGCCTCATGCACGGATCGATCATGCTAGTGGGA TTGCTGTGCTGGCCATTGTAATACTTCTTCTCTCAAATGTTGCTTCGAATGTACCAACTGTTCTTTTGCTTGGAGCAAAGGTAGCTGCTTCTGCCACTGC AATATCTCCCAGTAAAGAGAAGAAAGCTTGGCTCATCCTGGCATGGGTTAGCACAGTTGCTGGAAACCTTTCGTTATTGGGTTCTGCCGCAAACCTAATT GTGTGTGAACAAGCTCTTCGTGCCCACCCTAGTTATAATATCACTTTTTGGAGCCATTTGAAGTTTGGTTTTCCATCCACGCTTATTGTCACTACTATTG GCTTAGCTCTTGTATATTGTTATGATGTTTGA
AA sequence Show only first row Show all	>Potri.017G141950.1 pacid=42813301 polypeptide=Potri.017G141950.1.p locus=Potri.017G141950 ID=Potri.017G141950.1.v4.1 annot-version=v4.1 MFWRLLSDVKEEEDALYEMIVQEDSESGPQQSTEESKGLLNRWKRLCIYLGTVGMLVAFIMGLDMSWTALTAALSFAILDFEDAGPCLQKVSYSLLVFFC GMFITVEGFNRTGIPSSLWSLMEPHARIDHASGIAVLAIVILLLSNVASNVPTVLLLGAKVAASATAISPSKEKKAWLILAWVSTVAGNLSLLGSAANLI VCEQALRAHPSYNITFWSHLKFGFPSTLIVTTIGLALVYCYDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	0	1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	1.41	0.9760
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	4.24	0.9752
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	4.47	0.9708
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	6.32	0.9603
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127000 [exp]	7.34	0.9573
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127101 [exp]	8.12	0.9562
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	8.36	0.9544
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	9.38	0.9587
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	10.09	0.9598
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	10.48	0.9565

Compare expression of checked genes

Potri.017G141950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.