Plant FIBer expression Database

Potri.017G142200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57360 241 / 1e-79 unknown protein
AT3G02370 170 / 1e-52 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032322
[exp]
293 / 3e-100 AT3G57360 238 / 2e-78 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0476 tRNA-IECD_N PF12928 tRNA_int_end_N2 tRNA-splicing endonuclease subunit sen54 N-term
Representative CDS sequence
>Potri.017G142200.2 pacid=42813360 polypeptide=Potri.017G142200.2.p locus=Potri.017G142200 ID=Potri.017G142200.2.v4.1 annot-version=v4.1
ATGGATGCGGAGGATGATTGGGAATCATCTTCAGGAGAAGTGACCGACACTGACCAGTTCAACGATGAAGACTTTTACTCCACGTCTGCTTGTCTATCCA
AACTGCAATTCAGGAATGATGTTTCAAAGGCTAAATGGAATGTTGAGATGGGAATGGCTGAAGTTATTGAAAAGAAAGGGAAAATGTGGATTACTACTGG
GATTGTTCGTAATGGCAAGACTTTTTGCTTGATTGAGGAGACATTGTTTTTGGCCGAAATAGGGGCATTGCTTGTTATGGATGACAATGATGAGTGTCTT
GCATTGAAAGACATACACAAGAAGATGTCTGAAGAAAGGAATGGGTGCAGCTGGGAGCTTTTTGAGGTATATAAACACTTGAAGTCTCTTGGTTATGTTG
TTGGGCGTCATGGTGTTCCTTGGAGTATGAAGGGTGTTGAGAATAACAGCAAACCTTGTTCTTCTCAAGGGACTATTCAAAACAACAGGGTTGAAGGTGT
TGAAGAGAACAGCATTACTTGCGCTGTGCAGATGCTCAGTAATTTGCAAGTTGATGAGCTGAGACTAAATTTTGACGTTTATCTTCCAAATAGCAAGTTT
AGAAAGTCTTCACCCGGTGATCCAGCCTTTCTGCTATGCTTAGTTAGGGGAAGTCCACCATCCAATGCAAAAAGTAAAGTTCTTGAGAGACAATGTGTTG
GGATTCCTTTGAAGTTATGTCATGTAGACCATGGGCGTGTCAGCTTCTTTTCCTTCAAGAGGGTGGAGCTCCCCATTTTACCCTGA
AA sequence
>Potri.017G142200.2 pacid=42813360 polypeptide=Potri.017G142200.2.p locus=Potri.017G142200 ID=Potri.017G142200.2.v4.1 annot-version=v4.1
MDAEDDWESSSGEVTDTDQFNDEDFYSTSACLSKLQFRNDVSKAKWNVEMGMAEVIEKKGKMWITTGIVRNGKTFCLIEETLFLAEIGALLVMDDNDECL
ALKDIHKKMSEERNGCSWELFEVYKHLKSLGYVVGRHGVPWSMKGVENNSKPCSSQGTIQNNRVEGVEENSITCAVQMLSNLQVDELRLNFDVYLPNSKF
RKSSPGDPAFLLCLVRGSPPSNAKSKVLERQCVGIPLKLCHVDHGRVSFFSFKRVELPILP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57360 unknown protein Potri.017G142200
[exp]
0 1
AT5G01500 TAAC thylakoid ATP/ADP carrier (.1) Potri.016G115400
[exp]
2.44 0.7993
AT2G27830 unknown protein Potri.009G149200
[exp]
5.19 0.8312
AT2G24220 ATPUP5 purine permease 5 (.1.2) Potri.006G184900
[exp]
6.16 0.8053
AT4G03500 Ankyrin repeat family protein ... Potri.019G105900
[exp]
9.94 0.7773
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.006G069300
[exp]
12.04 0.7919
AT5G50180 Protein kinase superfamily pro... Potri.017G065500
[exp]
15.16 0.7078
AT1G25290 ATRBL10 RHOMBOID-like protein 10 (.1.2... Potri.003G019500
[exp]
21.21 0.7876
AT1G19720 Pentatricopeptide repeat (PPR-... Potri.002G030200
[exp]
21.90 0.7796
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063200
[exp]
25.45 0.7731
AT5G66320 GATA GATA5 GATA transcription factor 5 (.... Potri.004G161500
[exp]
27.12 0.7489

Potri.017G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.