Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52520 878 / 0 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) AT3G62120 380 / 4e-126 Class II aaRS and biotin synthetases superfamily protein (.1.2) AT5G10880 126 / 2e-32 tRNA synthetase-related / tRNA ligase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112400 [exp] 399 / 5e-134 AT3G62120 812 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.002G187000 [exp] 399 / 6e-134 AT3G62120 827 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.004G078932 [exp] 242 / 7e-77 AT5G52520 204 / 1e-62 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.004G078866 [exp] 227 / 2e-72 AT5G52520 215 / 3e-68 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039267 [exp] 905 / 0 AT5G52520 929 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Lus10027506 [exp] 897 / 0 AT5G52520 915 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Lus10016281 [exp] 365 / 7e-121 AT3G62120 876 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain CL0458 [poplar] [flax] PF09180 [poplar] [flax] ProRS-C_1 Prolyl-tRNA synthetase, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G142500.1 pacid=42814505 polypeptide=Potri.017G142500.1.p locus=Potri.017G142500 ID=Potri.017G142500.1.v4.1 annot-version=v4.1 ATGGTATCATCTCTTCGACTCCCCTCACTAACCTCCCTATTCTCCTCTCCCTACCTCCGCCGCCCTCCTCCTTTACTCCGCCGTCCTCACCACCACCACC ACAAACTCTCCTTCCCTCCACCACTAACCACGGCCTTCTCCTCCCAAACCACATCAGCATCCACAACCGAAAACCCCAAGAAACAAACTAACCAAGACCA AAAAGTAATCACTCCTCGGTCTCAAGACTTCAATGCTTGGTTTCTTGACATCATTGCTAACGCTGAACTTGCTGATTATGGTCCAGTTCGTGGCACCATG GTCATTCGTCCCTACGGTTATGCCATCTGGGAAGCCATTCAGGATTATTTGAATGTGAAGTTTAAGGAGACTGGACATAGTAACATGTACTTTCCTCAGT TTATACCATTCTCCTTTATTGAGAAAGAAGCTAGTCATGTTGAGGGGTTCAGTCCAGAATTGGCTCTTGTAACTATTGGGGGAGGAAAGGAACTTGAAGA AAAACTTGTGGTTCGACCCACTAGTGAAACCATAGTGAATCACATGTTTACTCAGTGGATTCATAGTTACCGTGATCTTCCTCTCATGGTAAACCAGTGG GCAAATGTCACAAGATGGGAGATGCGCACAAAGCCGTTTGTGAGGACTCTTGAATTTCTGTGGCAGGAGGGTCACACAGCTCATGCAAATCCAGAGGAGG CAGAAAATGAGGCATTGCAGATGATTGATGTCTATACAAAATTTGCTTATGAGCAAGCTGCAATACCTGTTATTGCAGGTAGAAAATCAAAAGCAGAAAC TTTTGCTGGTGCTGATAGGACATATACAATAGAGGCTATGATGGGTGATCGGAAAGCATTACAAGCTGGAACTAGCCACAACCTCGGGCAAAACTTTTCT CGGGCTTTTGGAACACAGTTTATGGATGAAAATGGAGAGAGGCAACATGTGTGGCAGACATCATGGGCTGTCAGCACCCGCTTTATTGGTGGTATTATTA TGACCCATGGAGATGATTCTGGTCTAATGCTACCCCCGAAAATTGCACCAATACAGGTGGTGATTGTGCCAATCTGGAAAAAAGAGGATGAAAAAACTGG AGTACTCAATGCAGCATCTTCTGTAAAAAAAGTCTTGCAATCTGCTGGTATCAAAGTTAAGCTCGATGACACAGATCAGAGAACCCCGGGATGGAAGTTC AATTTCTGGGAGATGAAGGGAGTCCCTCTGAGGATTGAAATTGGTCCTCGAGATGTTTCAAGTGCAAGTGTGGTCATATCTAGGAGAGACGTTCCTGGAA AGCAAGGAAAAGTGTTTGGAATATCCATGGAGCCTTCAATTTTAGAAGCTTATGTCAAGGACAAGTTGGATGAGATCCAGTCATCTCTTCTGGGAATGGC AACATCATTTCGGGATAGTAACATTGTGGACGTGAGCTCATATGATGAACTCAAAGCAGCAATAACCCTTGGTAAATGGGCTAGGGGTCCTTGGTCAGCT AGTGATGCGGATGAAAAAAGAGTAAAAGAAGAAACAGGGGCAACAATTCGGTGTTTCCCCTTTGAACAGCCTCAAGGGACCAAAACATGCTTGATGACTG GCAGCCCAGCAGAAGAAGTTGCAATTTTTGCAAAATCTTATTAA
AA sequence Show only first row Show all	>Potri.017G142500.1 pacid=42814505 polypeptide=Potri.017G142500.1.p locus=Potri.017G142500 ID=Potri.017G142500.1.v4.1 annot-version=v4.1 MVSSLRLPSLTSLFSSPYLRRPPPLLRRPHHHHHKLSFPPPLTTAFSSQTTSASTTENPKKQTNQDQKVITPRSQDFNAWFLDIIANAELADYGPVRGTM VIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPFSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMVNQW ANVTRWEMRTKPFVRTLEFLWQEGHTAHANPEEAENEALQMIDVYTKFAYEQAAIPVIAGRKSKAETFAGADRTYTIEAMMGDRKALQAGTSHNLGQNFS RAFGTQFMDENGERQHVWQTSWAVSTRFIGGIIMTHGDDSGLMLPPKIAPIQVVIVPIWKKEDEKTGVLNAASSVKKVLQSAGIKVKLDDTDQRTPGWKF NFWEMKGVPLRIEIGPRDVSSASVVISRRDVPGKQGKVFGISMEPSILEAYVKDKLDEIQSSLLGMATSFRDSNIVDVSSYDELKAAITLGKWARGPWSA SDADEKRVKEETGATIRCFPFEQPQGTKTCLMTGSPAEEVAIFAKSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	1.00	0.9861
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	1.41	0.9854
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	3.46	0.9817
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	3.87	0.9799
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	4.47	0.9815
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Potri.001G358400 [exp]	4.69	0.9713
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	5.91	0.9772
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	6.32	0.9732
AT3G22690			unknown protein		Potri.013G044700 [exp]	6.92	0.9773
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	7.14	0.9687

Compare expression of checked genes

Potri.017G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.