Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52530 84 / 4e-16 dentin sialophosphoprotein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079000 [exp] 1422 / 0 AT5G52530 122 / 4e-28 dentin sialophosphoprotein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038838 [exp] 193 / 1e-49 AT5G52530 70 / 2e-11 dentin sialophosphoprotein-related (.1.2.3) Lus10014954 [exp] 96 / 4e-20 ND / Lus10014955 [exp] 88 / 3e-17 AT5G52530 49 / 1e-05 dentin sialophosphoprotein-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G142600.6 pacid=42813595 polypeptide=Potri.017G142600.6.p locus=Potri.017G142600 ID=Potri.017G142600.6.v4.1 annot-version=v4.1 ATGATGAGTGCAGCAGGTCTAGAACTTACGAATTTTATAGATCCTGATTTGACTTGGAAGACATTTACAAAAGGCCACAGGAGTACGTCAAGGCGTAAGC CAGTTGTTAGAAGCTTTAATGGGAAGGCAAAGCTATCAGATGAGAGTACCAGAAATATGGATGACATGACGGTTTCAGATAATGAGAAGCATGGTGTGGC TGTTCTTGGCCGCCGCTTCAGTGGAAAAAATGAGAAAAAAGAGCATGTACCCATTAAAAAACGAAGACATACAGCCCAGGGTCCCCCACAACCTTCTTGT ACCACATCTCCATGCTTTGAAGTGGTTGAACTTAATTCAAGTGGGAAACGACGACGTAGAGCAACTGATGCTGCTGTGCCAAGTAAGCTCAATTTGAAGA CATCAGAGGTCCATGATAAGTTTGATTACAGTGATGACTTCTCAGGCATTGAGATACTCGCAGCTGTTGCTTGCAACAATGGTATGATTAATGATGCTGC TCGTGAAGAAAGTTCAATATTGGAAGAATCAACACGAGAAGGAGTGGGCTCATCTTCTTCTGCAGTTCCGTTCAAAGAAACTGTTGCATCCCCAAAAGAT ATGGCTGATGAAGATAGACCAGATGCCTTTCAAAATAGTGAAGTTACAGTTTTGCATGCATCTGCTGGTACCAAGGATAGCGGAACAGGAGAAGGATCTC TATTGTCACGGGATGAAATGTTGAATCTGGACTTGAATGTTACCTGGGAGCAAACTTGTGATACTTCGATCTTTGATTCCAGTGAAAATGATTTACAAAG TTGTGAGGTTAAGCCTGAAGCCTTGGAACAGCAAAACCGTCCTGACAGAGTGGTTTTGTCAGATTTACTTGGGGATAATACATCCGTTGATTTGATAGGC TTGTCTCTTGGGACATGTGAATCGATTAGAGAGGAACCTGAATCTGAAGCTTGCTCCCTCCATGATGGAAAACATGAAGAATGTTTTCCGTCTCCAACTG GTAATGCCCTGGAACCCTCCATTTGTGATGTTGCCAATGCAGAAGCTTCAAGTCAGGCTGTTTATGGGGATAAATCCCTAGATCATCCATCGTGCAATAC ACTTCCTAGCCTTACTCTCAAGCAGTGTTCAGAAATGTGTTCAACAGATGAACAAGTTATAAAAGTTTTGTGTACTGAAAGTTTGCAGGTTGAGTCATGT AATGTTTCTCCTCACCATCAACCTAACTTGGAGAGAGTTCCTAGTGAGATTGATCTTTCAATCTCAAATGATAACGGAGAGAATTCTCAGATAGCAACCT GCCCACATGAAGATGGGAAGTTAAATACAAGTAGCTTGGAAAACTGTCCACCAATAGAACCTGCTTGGCTTGGAGTTGAATCTGGAGGTCAAGAAGAAGA ATCAGGTGAACGGCAGTGTTCGCCTAATAGAAGTGCCTGTTTGTCTTCTGAGAAAGGCCAACCCGTGATGGAAGTGGATGCCAATGGAACCAATGAGGCT TCTGCTGCCAATAAAGCAGAAGCTCATTCTCCAGTGCAAGCTGGGTCTGAGGAATTGATGCAGAAGTCTTCTGCAGACTCTACTGTCACTCCTGGAGATG CATGCGGAACACATGGTAATGGTTTTACAAGTGGCTCAGCTAAGGTCAATATGGAAGATCTGGAAGATGACAGCTTTGAATCAGATGTTTATCAAGCTGA TAAGGTTCACATAGTTGGCATAAACGGTTTAGAACTTCAGGCTGGTTATGATTCTCCGTTTGAGGATGGGGAGTTGAGGGAATCTGATGCACAGTATTAC TGGGATGAAAATGGGGAGGATGGTGAAGTCGAGCAGGTGGACTATGGGTCTGAATGTGATGAAGAAAGACTCTGTGTCTTGGATAATGAGAAGGAAATGA AGGTTGAGAGAGGTTCCAGTTCGGGATCTGATTATGTTAGTAGAAAAATTGAACAATGTGGGTTGGGAGATTCTCTGAGAGATGACTTGCTTAGCCCAAA GACAAGAACTTCGTATGTCACTATTGACAAGGATTTCCTGTCCGGGGTGGTTGGATCAAAGGCATCCGATAGAGATTTCCTGTCGAGCATTGAGGAGTCC AATGCCATATTTAGGAAGCATCGTACACTTAGGAGCAGATCCAACAGTTTTTATAATTTATATCATCGAGATGAAAGGGATGCAGGTTCCCAAAAATTCA TGGGAAGGGACAGGGCTGTTCCTCCAACACGTGGCAGAAGTCCTGGAGGCCATCGCTTTGTCAATGATGCACCAGGCTACTGTGACTCAGAAAGGCGCCA TTTTTGTACTTATCGTGGCAATTACACTTCTGGCCCTTCTAGAACTAGAGGTGGTTTTGATAGCCACAGATACGTAATAACCTCAGACCGTGCAGCCTCT GAAGGAGCAGGGTTTGCAGGATCTGACAGTCGTGGCCGCAGGCGATTTGTTAATCCTTCTTCGAACAGTTCATATGAACGGGTCACGAGGAGGAGATCAC CTACCAGCAGAGATGATTTATACCGTGTGCATACAGGAACGCAGCCTGTGAGAGATGGTAGCCCAGTCAGGAGTGGGTTTAGAAGATTTCCAAGAGGGGC TGCAACAGGAGGCTTGAGAGGGGAATACCACAGGCCAATGCCAGAGGACAAGATTGAATATTCTAATCGTTATGCACCACGGATGCTTAGGAGAGAAAGA AGCATCTCCCCCTTATGCAGAGGACAACCTAGCTACCCCTTCACACACAAGAAATCTCGGTCAAGATCCAGGAGTCGCTCTCCTTCATATTTAACTAGGG ACAGAAATGAGGCTTCAAGGCTTCGTAGCAGGTCTCCAGATTTTAGGACTGATGCTAGGATGGATAGAGTGAGGTTGCCATTTCAGAAGCGTATTCCAGC TGATTTTGAAGAGGGGTTTATCCCTACAAGAAGAAATCACTTTACACAGCATAATCCCAGATGGTTTGATGATCGAAATGGTGGTTTAGATAGTTTCAGG GGAAGAAAATCACCTGTGAATATGTTCCGTTCAGATCAAAGATTTGATTCAGTGCGAACCATCCGGAGATTGGATTCAGAGGATCAGTTCAGAGAGAGGA TACGATCCAGAAAATTTAATGATATGGGGAGCGCTAGCAGGGGAGGTGAATTTGACAGCAGTGATGATGGCAGGAGAAAGCATAATAACAAATATGAGAT TGTTCAGCGAGTGAGACGATATGATACAGATGGTGGTCTGCGGCGATTCCGGGTTAATGCAGAAGATTCCTTGGTGGCAAATAATGCTACTCCTAACTGT GATGATGGAAACAGAATTACTGACAGAAGGCCTGGAGAGGTCCTTAGAAGGGATGGTGAAGAGTAG
AA sequence Show only first row Show all	>Potri.017G142600.6 pacid=42813595 polypeptide=Potri.017G142600.6.p locus=Potri.017G142600 ID=Potri.017G142600.6.v4.1 annot-version=v4.1 MMSAAGLELTNFIDPDLTWKTFTKGHRSTSRRKPVVRSFNGKAKLSDESTRNMDDMTVSDNEKHGVAVLGRRFSGKNEKKEHVPIKKRRHTAQGPPQPSC TTSPCFEVVELNSSGKRRRRATDAAVPSKLNLKTSEVHDKFDYSDDFSGIEILAAVACNNGMINDAAREESSILEESTREGVGSSSSAVPFKETVASPKD MADEDRPDAFQNSEVTVLHASAGTKDSGTGEGSLLSRDEMLNLDLNVTWEQTCDTSIFDSSENDLQSCEVKPEALEQQNRPDRVVLSDLLGDNTSVDLIG LSLGTCESIREEPESEACSLHDGKHEECFPSPTGNALEPSICDVANAEASSQAVYGDKSLDHPSCNTLPSLTLKQCSEMCSTDEQVIKVLCTESLQVESC NVSPHHQPNLERVPSEIDLSISNDNGENSQIATCPHEDGKLNTSSLENCPPIEPAWLGVESGGQEEESGERQCSPNRSACLSSEKGQPVMEVDANGTNEA SAANKAEAHSPVQAGSEELMQKSSADSTVTPGDACGTHGNGFTSGSAKVNMEDLEDDSFESDVYQADKVHIVGINGLELQAGYDSPFEDGELRESDAQYY WDENGEDGEVEQVDYGSECDEERLCVLDNEKEMKVERGSSSGSDYVSRKIEQCGLGDSLRDDLLSPKTRTSYVTIDKDFLSGVVGSKASDRDFLSSIEES NAIFRKHRTLRSRSNSFYNLYHRDERDAGSQKFMGRDRAVPPTRGRSPGGHRFVNDAPGYCDSERRHFCTYRGNYTSGPSRTRGGFDSHRYVITSDRAAS EGAGFAGSDSRGRRRFVNPSSNSSYERVTRRRSPTSRDDLYRVHTGTQPVRDGSPVRSGFRRFPRGAATGGLRGEYHRPMPEDKIEYSNRYAPRMLRRER SISPLCRGQPSYPFTHKKSRSRSRSRSPSYLTRDRNEASRLRSRSPDFRTDARMDRVRLPFQKRIPADFEEGFIPTRRNHFTQHNPRWFDDRNGGLDSFR GRKSPVNMFRSDQRFDSVRTIRRLDSEDQFRERIRSRKFNDMGSASRGGEFDSSDDGRRKHNNKYEIVQRVRRYDTDGGLRRFRVNAEDSLVANNATPNC DDGNRITDRRPGEVLRRDGEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52530			dentin sialophosphoprotein-rel...		Potri.017G142600 [exp]	0	1
AT5G52530			dentin sialophosphoprotein-rel...		Potri.004G079000 [exp]	1.00	0.9105
AT2G33490			hydroxyproline-rich glycoprote...		Potri.003G166300 [exp]	3.16	0.8637
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	5.29	0.8963	HAC901,Pt-HAC1.4
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.007G106800 [exp]	6.16	0.8472	Pt-MAP3.2
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	7.54	0.8681
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	8.12	0.8584	LON.2
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	13.11	0.8654
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Potri.002G149800 [exp]	16.97	0.8593
AT3G22980			Ribosomal protein S5/Elongatio...		Potri.009G152500 [exp]	17.32	0.8406
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	17.83	0.8609

Compare expression of checked genes

Potri.017G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.