Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) AT5G52540 456 / 2e-158 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079300 [exp] 477 / 1e-166 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.017G142882 [exp] 92 / 3e-09 AT5G24000 77 / 2e-16 Protein of unknown function (DUF819) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039272 [exp] 521 / 0 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10039273 [exp] 476 / 4e-166 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1) Lus10027508 [exp] 471 / 4e-164 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1) Lus10027507 [exp] 474 / 2e-156 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF05684 [poplar] [flax] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Potri.017G142841.1 pacid=42814357 polypeptide=Potri.017G142841.1.p locus=Potri.017G142841 ID=Potri.017G142841.1.v4.1 annot-version=v4.1 ATGTATCACTTCACTGAGAATTCCTCTCTTAAACACCTTCCATTAATGGCTTCTCCAGCACTAATACCTTATCTCCCTCTCTCCCCCTCATCAAGAATAC TGTTACACTATTCACCACCCTTTTCAGCCCCTCATGACTCCCTCCACCTCACTCCTTCAAAATCTACACCTTTATCTCCTACAATATGTACAAGGCCTAA CAAGAGCTGCAACCCAATTCAATCAGTAAAAGTTTGTTCACAGTTGAGGTATCCCATCATTTCTCCAGATGACCATTGGGGCACCTGGACTGCCCTCTTT GCCACAGGGGCTTTCGGTATCTGGTCTGAGAGGACAAAAATTGGGAGTATGCTGAGTGCAGCCTTGGTGAGCATATTGGTTGGACTTGCAGCTAGTAATG TAGGAATCATTCCTTATGAAGCAAGGGCATATTCAGTTGTGTTCGAGTATCTGCTGCCCCTAACTGTTCCTTTGCTGTTGTTCAGAGCTGACTTGCGGAA TGTGTTTAGATCAACTGGGACTTTGCTCTTAGCTTTCTTGCTTGGTTCAGTTGCAACTGTGATTGGAACTTTCGTTGCCTTTCTGATGGTGCCTATGCGA TCACTTGGCCAAGATAATTGGAAAATAGCTGCTGCTCTCATGGGGAGTTATATTGGTGGATCTGTTAATTATGTTGCGGTTACAGAGGCACTTGGTGCTT CTCCATCAGTTGTGGCTGCAGGAGTTGCCGCAGACAATGTAATCTGTGCTATATACTTCATGGTATTATTTGGATTAGCTTCTAAAATACCTCCTGAGGT TTCAACCTCAACTAAAGGTGCTGAAGTGGATGTGTCATCCAATTCGGAAGACAAAGTCCCTGTGCTACAGACTGCTACTGCACTTGCTATCTCCTTTATG ATATGTAAGATTGGCGCGTATCTCACGCAACTGTGCAAGATTCAAGGAGGTACTCTTCCAGCAGTAACAGCTATTGTTGTCTTTTTAGCAACATTATTTC CAGCACAATTTGGTTATCTTGCTCCTGCTGGCGATACTCTTGCTATGGTTCTGATGCAGGTATTCTTTGCCGTAGTTGGTGCTGGTGGGAGTCTATGGAA TGTCATCAACACAGCACCAAGTATATTCTTATTTGCTCTGGTTCAAGTAACTGTTCATCTTGCTGTGATTCTTGGATTTGGAAAGCTGTTGCGCTTTGAC TTAAAGCTATTACTTCTAGCATCGAATGCCAACATCGGAGGCCCTACGACAGCATGTGGAATGGCCACAGCCAAAGGATGGGGTTCTCTGGTAGTTCCTG GAATTCTTGCAGGCATTTTTGGGGTTTCTATTGCAACTTTTCTTGGTATTGGCTTTGGAATGATGGTCCTTAAATACTTGTAG
AA sequence Show only first row Show all	>Potri.017G142841.1 pacid=42814357 polypeptide=Potri.017G142841.1.p locus=Potri.017G142841 ID=Potri.017G142841.1.v4.1 annot-version=v4.1 MYHFTENSSLKHLPLMASPALIPYLPLSPSSRILLHYSPPFSAPHDSLHLTPSKSTPLSPTICTRPNKSCNPIQSVKVCSQLRYPIISPDDHWGTWTALF ATGAFGIWSERTKIGSMLSAALVSILVGLAASNVGIIPYEARAYSVVFEYLLPLTVPLLLFRADLRNVFRSTGTLLLAFLLGSVATVIGTFVAFLMVPMR SLGQDNWKIAAALMGSYIGGSVNYVAVTEALGASPSVVAAGVAADNVICAIYFMVLFGLASKIPPEVSTSTKGAEVDVSSNSEDKVPVLQTATALAISFM ICKIGAYLTQLCKIQGGTLPAVTAIVVFLATLFPAQFGYLAPAGDTLAMVLMQVFFAVVGAGGSLWNVINTAPSIFLFALVQVTVHLAVILGFGKLLRFD LKLLLLASNANIGGPTTACGMATAKGWGSLVVPGILAGIFGVSIATFLGIGFGMMVLKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24000			Protein of unknown function (D...		Potri.017G142841 [exp]	0	1
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	10.67	0.9463
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	16.06	0.9407
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	16.70	0.9456
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	17.32	0.9441
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	20.49	0.9411	Pt-PSAL.3
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	21.21	0.9373
AT5G47435			formyltetrahydrofolate deformy...		Potri.001G156600 [exp]	28.28	0.9311
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	28.39	0.9268	Pt-PSBO.1
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	32.72	0.9403
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	35.32	0.9377

Compare expression of checked genes

Potri.017G142841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.