Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24000 76 / 6e-16 Protein of unknown function (DUF819) (.1) AT5G52540 69 / 9e-14 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079300 [exp] 101 / 5e-25 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.017G142841 [exp] 67 / 1e-12 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039272 [exp] 82 / 4e-18 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10027507 [exp] 79 / 6e-17 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10027508 [exp] 74 / 5e-15 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1) Lus10039273 [exp] 72 / 2e-14 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF05684 [poplar] [flax] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Potri.017G142882.1 pacid=42813809 polypeptide=Potri.017G142882.1.p locus=Potri.017G142882 ID=Potri.017G142882.1.v4.1 annot-version=v4.1 ATGGGGCTCCTGGACTATTCTTTTCGCCACTGGAGCTTTCGGCATCTGGTTTGCCAATCCAAGCAAGGCAGGTCAGAAGGGACCAAGATTGGAAGTGCAT TGAATGGTGCATCAGTGAGTGCTTTACTTGGGCTAGCAGCTAGTAGTTTGGGGATTATTTCTTTTGAATCTCCTGCTTATTCTATCCTATTGGAGTTTCT GTTTCCATTGACAATTCCACTATTGCTGTTTAGAGCTGATTTGCGTCGCGTGTTTACGTCTACTGGGATATTTCTTCTGGCTTTCTTGATAGGAACAGTT GGAAAAATAGTTAGAACAGTATTGGCCTATATGATGGTACCGATTCTGGATAGCGTGGCTATAGCAGCTGCATTTCCAACCCAGTTCAATCTCCTTGTAC CATCTGGTGAGGCTTTGGCTATGATTCTGAAGCAGGTTTCCATTCATCTTTTTGTGATCCTCGGACTTGGAAAGCTATTTCGATTCGATCAAAAGCCGTT GCTGATTGCATCAAATGCTAATATTGGAGGCCCAACAACCGCATATGGAATGGGCAATGCTAAAGGGTGGATCGAGTTCTTTGGTTGCTCCTGCCATTAT TGCTTACATTTTTGGAAATTTTTATTTTCTTTGTTTTGGGAGTAA
AA sequence Show only first row Show all	>Potri.017G142882.1 pacid=42813809 polypeptide=Potri.017G142882.1.p locus=Potri.017G142882 ID=Potri.017G142882.1.v4.1 annot-version=v4.1 MGLLDYSFRHWSFRHLVCQSKQGRSEGTKIGSALNGASVSALLGLAASSLGIISFESPAYSILLEFLFPLTIPLLLFRADLRRVFTSTGIFLLAFLIGTV GKIVRTVLAYMMVPILDSVAIAAAFPTQFNLLVPSGEALAMILKQVSIHLFVILGLGKLFRFDQKPLLIASNANIGGPTTAYGMGNAKGWIEFFGCSCHY CLHFWKFLFSLFWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24000			Protein of unknown function (D...		Potri.017G142882 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Potri.001G293150 [exp]	20.78	0.5048
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Potri.009G117900 [exp]	45.44	0.5621
					Potri.001G420750 [exp]	80.24	0.4899
AT2G23240		AtMT4b	Arabidopsis thaliana metalloth...		Potri.009G167700 [exp]	127.38	0.4500
AT1G05580		ATCHX23	cation/H+ exchanger 23, cation...		Potri.007G111400 [exp]	141.66	0.4304	ATCHX23.1
AT4G02160			unknown protein		Potri.002G199100 [exp]	158.91	0.4243
AT4G00755			F-box family protein (.1.2)		Potri.014G076200 [exp]	168.69	0.4361
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	269.09	0.3971

Compare expression of checked genes

Potri.017G142882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.