Plant FIBer expression Database

Potri.017G142923 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G142923.1 pacid=42814017 polypeptide=Potri.017G142923.1.p locus=Potri.017G142923 ID=Potri.017G142923.1.v4.1 annot-version=v4.1
ATGGAGTGCAAGAAGGTTGGTTTGCTTCTGACGGTGGTCATGCTCGTAGTGGCCACTGTTCCTTATTCCACGGTTGCCATGAGGCAAATTCCACTCTCAA
ACATCATGTTTGCTGGTGAAATGAATGATACCTGTGTCGGTGATGGCCGACGATGCCATGGGGATGGTCTTTGCTGTGCTAATTTCGTTTGCAAAGATAA
TGTATGCAGAAAAAAAAAGGGAGAAGAAGATGGGTGGTGA
AA sequence
>Potri.017G142923.1 pacid=42814017 polypeptide=Potri.017G142923.1.p locus=Potri.017G142923 ID=Potri.017G142923.1.v4.1 annot-version=v4.1
MECKKVGLLLTVVMLVVATVPYSTVAMRQIPLSNIMFAGEMNDTCVGDGRRCHGDGLCCANFVCKDNVCRKKKGEEDGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G142923
[exp]
0 1
AT1G75820 ATCLV1, FLO5, F... FLOWER DEVELOPMENT 5, FASCIATA... Potri.002G019900
[exp]
2.23 0.9594 Pt-CLV1.1
AT1G48600 AtPMEAMT phosphoethanolamine N-methyltr... Potri.015G039000
[exp]
2.44 0.9414
AT2G30370 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen... Potri.019G128200
[exp]
2.44 0.9573
AT5G16560 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-... Potri.004G082400
[exp]
3.74 0.9289
AT1G76420 NAC NAC368, CUC3, A... CUP SHAPED COTYLEDON3, Arabido... Potri.002G005800
[exp]
3.87 0.9421
AT3G11480 BSMT1, ATBSMT1 S-adenosyl-L-methionine-depend... Potri.019G022002
[exp]
6.92 0.9331
AT4G21750 HD ATML1 MERISTEM LAYER 1, Homeobox-leu... Potri.011G025000
[exp]
7.74 0.9501 Pt-ATML1.1
AT1G04500 CCT motif family protein (.1) Potri.008G171500
[exp]
8.94 0.9400
AT1G01630 Sec14p-like phosphatidylinosit... Potri.017G063966
[exp]
10.24 0.9287
AT2G23060 Acyl-CoA N-acyltransferases (N... Potri.010G144700
[exp]
11.53 0.9402

Potri.017G142923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.