Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65840 721 / 0 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 628 / 0 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 624 / 0 ATPAO2 polyamine oxidase 2 (.1) AT4G16310 222 / 5e-63 LDL3 LSD1-like 3 (.1) AT3G10390 211 / 6e-60 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 188 / 1e-51 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 172 / 2e-46 LDL2 LSD1-like2 (.1) AT4G29720 132 / 4e-33 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 128 / 5e-32 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G01690 46 / 4e-05 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075800 [exp] 945 / 0 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 617 / 0 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 611 / 0 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.005G235400 [exp] 228 / 6e-65 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 223 / 2e-63 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.008G035200 [exp] 211 / 1e-59 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 206 / 4e-58 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 195 / 2e-54 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 181 / 1e-49 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020726 [exp] 607 / 0 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 606 / 0 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 520 / 0 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10001044 [exp] 331 / 1e-111 AT2G43020 439 / 2e-154 polyamine oxidase 2 (.1) Lus10033928 [exp] 223 / 3e-63 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 219 / 1e-61 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 195 / 3e-54 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 192 / 2e-53 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 189 / 5e-52 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10039599 [exp] 166 / 1e-45 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.017G144001.1 pacid=42813177 polypeptide=Potri.017G144001.1.p locus=Potri.017G144001 ID=Potri.017G144001.1.v4.1 annot-version=v4.1 ATGGAGAATCTGATTGATAACGTAGGCACTTTTCCTTCACAAGTTGAGAGGCAAAACAGTTCAATTCCTACTGTCATCGTGATTGGTGGTGGTATTTCAG GGCTTGCTGCTGCACGAATGCTGCACGATGCATCTTTTAAGGTGATCTTGCTGGAATCACGGGATAGACTCGGTGGCCGCATTCATACTGACTATTCATT TGGCTATCCAGTGGATTTAGGAGCATCCTGGCTACATGGTGTTTGCAATGAGAATCCTTTGGCTCCGCTGATACGAGGTCTGGGGCTTAAATTATACCGT ACTAGTGGTGACAACTCTGTATTGTATGACCATGATCTGGAGAGTTATACCCTTTTTGACAAGGAAGGACGTCAAGTTCCACAACAGATGGTCATTGAAG TTGGAGATACATTCAAAAGAATTCTCGAGGAGACTGAGAAAGTAAGAGATGAACACACTGATGACATGTCTGTTCTTCAAGCAATTTGGATTGTGCTAGA TAAGCATCCAGAATTAAGGCAAGAAGGACTTGCATATGAAGTGCTGCAATGGTACATCCGTAGAATGGAAGCGTGGTTTGCAGCAGATGCTGATATGATA TCACTGAAATCTTGGGATCAGGAGCAAGTTCTTTCCGGAGGTCATGGTCTTATGGTGCAAGGTTATGACCCTATAATAAAGGCTCTTGCAAAAGATATTG ATATACAGTTGAATCACAGGGTTACAAAAATATCCAACGGGCCTAATAAGGTGATGGTCACAGTAGAGGATGGGACAGGCTTTATTGCTGATGCAGCTAT CATTACAGTACCCCTTGGGATTCTCAAGGCCAACTTAATTCATTTTGAGCCAAAGCTGCCACAGTGGAAGGTTGATGCAATTTCGGATCTTGGTTTTGGC TGTGAAAACAAGATTGCATTGCAATTTGATAAAGTATTTTGGCCAGATTTGGAACTCTTGGGCATTGTTGCGCCCACATCTTATGCTTGTGGCTATTTTC TCAATCTTCACAAGGCAACGGGCCATCCTGTTCTTGTCTACATGGCTGCTGGAAGGTTTGCTTACGATCTTGAGAAGCTATCTGATGAATCTGCTGCAAA ATTTGTGATGTTGCAGCTGAAGAAAATGTTTCCTAACGCAACAGAGCCGGTTCAGTATCTTGTAACACGATGGGGAACAGACCCGAACTCACTTGGTTGT TACTCTTATGATCTGGTTGGAAAGCCTGAAGATTCATACGAGAGACTCCGCGCACCCTTGGGCAATCTCTTCTTTGGAGGAGAAGCAGTTAGCATGGAGG ACCATCAAGGATCTGTGCATGGAGCATACTCAGCTGGAATTATGGCTGCCGAGAGCTGTCAAAGACACCTATTAGAGAGACTTGGCTACTTCGATAATCT CCACCTAGTCCCTTCTAGAGGTGCAATCCATGATGCTACATTTCCTCTCCAAATCTCAAGGATGTGA
AA sequence Show only first row Show all	>Potri.017G144001.1 pacid=42813177 polypeptide=Potri.017G144001.1.p locus=Potri.017G144001 ID=Potri.017G144001.1.v4.1 annot-version=v4.1 MENLIDNVGTFPSQVERQNSSIPTVIVIGGGISGLAAARMLHDASFKVILLESRDRLGGRIHTDYSFGYPVDLGASWLHGVCNENPLAPLIRGLGLKLYR TSGDNSVLYDHDLESYTLFDKEGRQVPQQMVIEVGDTFKRILEETEKVRDEHTDDMSVLQAIWIVLDKHPELRQEGLAYEVLQWYIRRMEAWFAADADMI SLKSWDQEQVLSGGHGLMVQGYDPIIKALAKDIDIQLNHRVTKISNGPNKVMVTVEDGTGFIADAAIITVPLGILKANLIHFEPKLPQWKVDAISDLGFG CENKIALQFDKVFWPDLELLGIVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAAKFVMLQLKKMFPNATEPVQYLVTRWGTDPNSLGC YSYDLVGKPEDSYERLRAPLGNLFFGGEAVSMEDHQGSVHGAYSAGIMAAESCQRHLLERLGYFDNLHLVPSRGAIHDATFPLQISRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.017G144001 [exp]	0	1
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	6.92	0.8098
AT5G56220			P-loop containing nucleoside t...		Potri.001G472200 [exp]	12.16	0.8480
AT3G13600			calmodulin-binding family prot...		Potri.001G006200 [exp]	12.36	0.8417
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094900 [exp]	14.14	0.8127
AT1G71710			DNAse I-like superfamily prote...		Potri.005G197800 [exp]	19.74	0.8010
AT2G42140			VQ motif-containing protein (....		Potri.006G192100 [exp]	33.76	0.8227
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441400 [exp]	33.98	0.8116
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	35.07	0.7604
					Potri.003G020701 [exp]	35.15	0.8206
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	40.79	0.8046	PSCLRR52.53

Compare expression of checked genes

Potri.017G144001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.