Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37478 154 / 7e-48 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01015 86 / 6e-20 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 85 / 2e-19 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G03780 55 / 4e-09 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092100 [exp] 94 / 2e-22 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 72 / 6e-15 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G013100 [exp] 54 / 1e-08 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 52 / 4e-08 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020800 [exp] 139 / 4e-42 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10007382 [exp] 138 / 1e-41 AT5G37478 149 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10010706 [exp] 81 / 4e-18 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 79 / 2e-17 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10030650 [exp] 79 / 2e-17 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10017715 [exp] 54 / 2e-08 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10018608 [exp] 47 / 3e-06 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 46 / 6e-06 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.017G144061.1 pacid=42813835 polypeptide=Potri.017G144061.1.p locus=Potri.017G144061 ID=Potri.017G144061.1.v4.1 annot-version=v4.1 ATGGAGAAAGCACATACAAAATCTGCTCTTAAGAAGCTTGTTAAGGCTAGCTCACAGTCTGCACCATGGAGCAATGCTGCTAGAGGAATGGCAAAAGATG ATCTCAAGGATCCGCTTTATGACAAATCCAAGGTTGCCCCAAAACCTTTTGCAAAAGAAAACACTAAGCCCCAAGAATTCAAACTCCACACTGGACAAAG AGCTCTCAAACGTGCCATGTTCAACTATTCTGTGGCAACCAAGATATATATGAATGAGCAACAGAAGAGGCAAATAGAGAGGATACAAAAGATCATAGAA GAAGAAGAGGTTCGTACGATGAGGAAGGAGATGGTTCCAAGAGCTCAATTGATGCCTTACTTTGACAGACCTTTCTTTCCCCAAAGATCAAGCAGGCCAT TGACAGTTCCTAGAGAGCCAAGTTTCCACATGGTGAACAGCAAGTGTTGGAGCTGCATCCCTGAGGATGAACTTTACTACTACTTTGAACATGCTCATCC CCATGATCATGCCTGGAAGCCTGTTAAGTAA
AA sequence Show only first row Show all	>Potri.017G144061.1 pacid=42813835 polypeptide=Potri.017G144061.1.p locus=Potri.017G144061 ID=Potri.017G144061.1.v4.1 annot-version=v4.1 MEKAHTKSALKKLVKASSQSAPWSNAARGMAKDDLKDPLYDKSKVAPKPFAKENTKPQEFKLHTGQRALKRAMFNYSVATKIYMNEQQKRQIERIQKIIE EEEVRTMRKEMVPRAQLMPYFDRPFFPQRSSRPLTVPREPSFHMVNSKCWSCIPEDELYYYFEHAHPHDHAWKPVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37478			TPX2 (targeting protein for Xk...		Potri.017G144061 [exp]	0	1
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	1.41	0.9417
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	7.07	0.9006
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	8.12	0.9360
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	8.24	0.9265
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	8.66	0.9297
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	9.05	0.8911
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	10.19	0.9081
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	12.84	0.9241
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	15.16	0.9026	ATK2.1
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	15.29	0.9150

Compare expression of checked genes

Potri.017G144061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.