Plant FIBer expression Database

Potri.017G144121 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37370 407 / 2e-140 ATSRL1 PRP38 family protein (.1.2.3.4)
AT2G40650 50 / 1e-06 PRP38 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G075700
[exp]
481 / 4e-169 AT5G37370 411 / 4e-142 PRP38 family protein (.1.2.3.4)
Potri.013G012000
[exp]
56 / 3e-08 AT2G40650 346 / 7e-118 PRP38 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010963
[exp]
444 / 5e-155 AT5G37370 446 / 1e-156 PRP38 family protein (.1.2.3.4)
Lus10031361
[exp]
388 / 3e-133 AT5G37370 394 / 2e-136 PRP38 family protein (.1.2.3.4)
Lus10015203
[exp]
47 / 2e-05 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.017G144121.1 pacid=42812888 polypeptide=Potri.017G144121.1.p locus=Potri.017G144121 ID=Potri.017G144121.1.v4.1 annot-version=v4.1
ATGGAGATACAGACAAATGGGAAACCAATAGATTCGCTGTTAGAGAAGGTCCTTTGTATGAACATACTATCATCAGATTACTTCAAGGAGCTTTACCGAT
TAAAGACATACCATGAAGTGATAGATGAAATATACAATCAAGTTGACCATGTTGAGCCATGGATGACTGGCAACTGTCGTGGTCCATCTACTTCCTTTTG
CCTTCTATACAAGTTCTTCACCATGAAACTCACTGTCAAACAAATGCATGGTTTGCTAAAGCACAAGGATTCTCCTTATATCAGAGCGGTTGGGTTCCTC
TACCTGAGATATGCTGGGGATCCAAAGACACTGTGGAATTGGTTTGAACCATATATTAAAGACGATGAGGAATTTTCTCCAGGAACTAGTGGAAGGAAGA
CGACAATGGGTGTTTATGTGCGTGATTTGCTTCTCGGACAGTACTACTTTGATACCCTTTTCCCCCGTATTCCTGTTCCTGTCATGCGGCAGATCACATC
GAATCTGGAGAAGTTGAAGCTACCAACAAAAATCTCTGGTTCGACAGGGGATGGAAACCGTCATGGATCTGATGATACGGCACGCCGGCCACCATCTGTG
AAGGCAGCACTTTCAGTCTCTTTTGGTCAGCGTGCTCCTCATCGTGCATCAACCAGGGATTCGTCTCCTGTTCGTCGCACAATACCTTCCCCCTCCTATG
ACAGAACCAGTGATGATTCACGAAGTCGACTCGGCCAGAGTCGTGAATATTCTGATAAAGAATATTCAGATCGGGATCATGATAGGGGTAGGGAAAGGGA
CCAAGACCATGATCGGGATAGAGAGAGGGACAGGGTTCGGGATAGGGATCAGGAGAGAGAAAGGGACCGGGATCGTGAAAGGGATTGGGATCAGAGTCGG
GACAGAGACAGGGATCGGGAAAGGGATAGATACAGAAGGTATGATTATGATAGAAGTTCCAGGTACACTGATAGGGAAAGCAGAAGGGATTCTGAACAGA
GCAGCCGTGACAGAAGTAGGCATTATAGAGAAAGTAGTTCTTATAGAAGCCGCAGTCGAAGCAGGAGCAGGAGCAGGAGCCGAAGCTCGCAAGCTGGCGC
ATCACCATTTGATCGCCATCCAACTCCTCAAAGGGATGGAAACAAGGATAAGACATCTGCGCCTAGCAATCTGGCTAAGCTCAAAGATCTTTATGGTGAT
CTTAGTGATCAGAAAGGGGATGCTGGCCTGGAAAGGGTTCCTCGGAGGGATAATGATGGTGAAGAGGTTTTTAGACTCGGTGGTTCCACTTGGAGGTAG
AA sequence
>Potri.017G144121.1 pacid=42812888 polypeptide=Potri.017G144121.1.p locus=Potri.017G144121 ID=Potri.017G144121.1.v4.1 annot-version=v4.1
MEIQTNGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHKDSPYIRAVGFL
YLRYAGDPKTLWNWFEPYIKDDEEFSPGTSGRKTTMGVYVRDLLLGQYYFDTLFPRIPVPVMRQITSNLEKLKLPTKISGSTGDGNRHGSDDTARRPPSV
KAALSVSFGQRAPHRASTRDSSPVRRTIPSPSYDRTSDDSRSRLGQSREYSDKEYSDRDHDRGRERDQDHDRDRERDRVRDRDQERERDRDRERDWDQSR
DRDRDRERDRYRRYDYDRSSRYTDRESRRDSEQSSRDRSRHYRESSSYRSRSRSRSRSRSRSSQAGASPFDRHPTPQRDGNKDKTSAPSNLAKLKDLYGD
LSDQKGDAGLERVPRRDNDGEEVFRLGGSTWR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Potri.017G144121
[exp]
0 1
AT1G72710 CKL2 casein kinase 1-like protein 2... Potri.006G147800
[exp]
3.00 0.8285
AT4G25500 ATRSP40, AT-SRP... ARABIDOPSIS THALIANA ARGININE/... Potri.014G076600
[exp]
3.87 0.8010
AT5G11860 SSP5 SCP1-like small phosphatase 5 ... Potri.001G054700
[exp]
7.48 0.7299
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.015G028101
[exp]
21.67 0.8027
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.003G204700
[exp]
39.42 0.7125
AT1G73930 unknown protein Potri.012G060200
[exp]
47.18 0.7315
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.001G080200
[exp]
56.49 0.7529 VEF901,Pt-VRN2.5
AT5G26610 D111/G-patch domain-containing... Potri.005G002700
[exp]
61.70 0.6833
AT5G11850 Protein kinase superfamily pro... Potri.018G053800
[exp]
69.90 0.6961
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.001G160700
[exp]
69.97 0.6768

Potri.017G144121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.