Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65930 779 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT1G54340 758 / 0 ICDH isocitrate dehydrogenase (.1) AT5G14590 694 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT5G03290 47 / 2e-05 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 47 / 2e-05 IDH-VI isocitrate dehydrogenase VI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074900 [exp] 837 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.010G176000 [exp] 781 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 776 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 672 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.006G126700 [exp] 45 / 5e-05 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 45 / 7e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012111 [exp] 770 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10010431 [exp] 769 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 761 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 751 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10022252 [exp] 622 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 507 / 4e-178 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10026519 [exp] 50 / 2e-06 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 47 / 2e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 42 / 0.0005 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 42 / 0.0006 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.017G144541.1 pacid=42813396 polypeptide=Potri.017G144541.1.p locus=Potri.017G144541 ID=Potri.017G144541.1.v4.1 annot-version=v4.1 ATGGCTTTCGAAAAGATCAAGGTTGCTAACCCCATCGTTGAAATGGATGGAGATGAAATGACCAGAGTTTTCTGGCAATCAATAAAGGAAAAGCTTATTT TCCCATTTTTGGAGTTGGATATCAAGTACTTTGACCTTGGCCTTCCTCATCGCGATGCCACTGATGATAAAGTCACTATTGAAAGCGCAGAAGCTACTCT TAAGTACAATGTAGCAATCAAGTGTGCAACTATTACTCCAGATGAAGATCGTGTCAAGGAGTTTAAATTGAAGCAGATGTGGAAGAGTCCAAACGGAACA ATTAGGAACATTTTGAACGGTACTGTCTTCAGAGAACCAATTATTTGCAAAAACGTTCCCCGCCTTGTCCCAGGCTGGACGAAGGCAATTTGCATCGGAA GACATGCTTTTGGTGATCAATATCGAGCAACTGATGCAGTAATCAAAGGAGCTGGCAAACTCAAGCTAGTGTTTGTGCCAGAAGGACAGGATGAGAAGAC AGAGTTGGAGGTGTACAACTTTACAGGTGCTGGTGGGGTGGCATTGGCCATGTATAACACCGATGAGTCCATCCGTTCTTTTGCTGAAGCTTCTATGAAC ACTGCTTACCAAAAGAAGTGGCCACTTTATCTCAGCACAAAAAATACTATCCTTAAGAAGTACGATGGGAGATTCAAGGACATCTTTCAAGAAGTCTATG AGGCTAACTGGAAATCAAAGTACGAGGCTGCAGGAATATGGTATGAACACCGACTCATTGATGATATGGTTGCATATGCTCTCAAGAGTGAAGGAGGTTA TGTATGGGCATGCAAAAACTATGATGGGGATGTGCAGAGTGATTTCTTGGCCCAAGGTTTTGGATCTCTTGGCTTGATGACCTCTGTATTGGTGTGCCCT GATGGAAAGACCATAGAGGCCGAGGCAGCCCATGGCACAGTTACTCGGCATTACAGGGTTCACCAGAAAGGTGGTGAAACCAGCACAAACAGTATTGCCT CTATTTTTGCTTGGTCAAGAGGACTTGCCCACAGGGCTAAGTTGGATGACAATGCTAAACTCTTGGATTTCACTGAGAAACTAGAGGCAGCTTGCGTTGG AGCTGTGGAGTCTGGCAAGATGACCAAGGATCTTGCATTGCTTATCCATGGATCTAAGGTTAGTAGGGACCAGTACCTCAACACTGAAGAGTTCATTGAT GCTGTGGCCGTGGAGCTGAAAGCCAGACTTTCTGTCGAGGCATAA
AA sequence Show only first row Show all	>Potri.017G144541.1 pacid=42813396 polypeptide=Potri.017G144541.1.p locus=Potri.017G144541 ID=Potri.017G144541.1.v4.1 annot-version=v4.1 MAFEKIKVANPIVEMDGDEMTRVFWQSIKEKLIFPFLELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEDRVKEFKLKQMWKSPNGT IRNILNGTVFREPIICKNVPRLVPGWTKAICIGRHAFGDQYRATDAVIKGAGKLKLVFVPEGQDEKTELEVYNFTGAGGVALAMYNTDESIRSFAEASMN TAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNAKLLDFTEKLEAACVGAVESGKMTKDLALLIHGSKVSRDQYLNTEEFID AVAVELKARLSVEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.017G144541 [exp]	0	1
AT1G74320			Protein kinase superfamily pro...		Potri.003G193000 [exp]	6.48	0.7498
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108920 [exp]	9.38	0.7641
AT3G62220			Protein kinase superfamily pro...		Potri.014G114200 [exp]	10.39	0.8023
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	12.00	0.7705
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Potri.010G109500 [exp]	27.98	0.8041	PGM1.1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.010G057600 [exp]	42.21	0.7855
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	48.06	0.7772
AT3G02360			6-phosphogluconate dehydrogena...		Potri.017G106900 [exp]	48.12	0.7075	GND.2
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.001G420200 [exp]	63.47	0.7699	Pt-GPT.4
AT4G37970		ATCAD6	cinnamyl alcohol dehydrogenase...		Potri.016G078300 [exp]	67.88	0.7197	SAD

Compare expression of checked genes

Potri.017G144541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.